AMCG00017887 (mk1i1)


Basic Information

Item Value
gene id AMCG00017887
gene name mk1i1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26988294 ~ 26992258 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017887
CGCTAATGTGTAAATATCATGTGACACAAAACTGAAGCTGAACAGGCTGTCAAATCTGCAAAGAAACACAGACGCATTTTGATCAGGTTGTTTCAgttgaacaaaaacaatggcAGATGTAAGTATGTGTATTGCATGCTGGTTAGACTTGACAGTTGAATAGGCTTGTTGTCTTCATCAATGCACAGTGCATTTGCAAATACTTATTAGTTGCATGTATTTAGTTTTCAGGCAAGTTTCTGTTTCCATATTATGTACTAATTTGTGCTCACCTAAGCATCATAGTATTACATGACCAGGTTTCTAACAGGCCTTTCTAGTGATCTCATCCCCAGTCACTGGAGTTTCATTGTTTCAGATGGATTCctgtaacttatttatttatttattattagttatttatttagtatgcAATACTAAATTCCCATAAACAGTCTTTCCATGAGCAACAAACTCACCTGTTGTCCGATTCTTTTTCACAGGACCTGAAGAGGTTTCTCTATAAGCAGTTGCCAAGGTTGTGTTGTTTCCGCACAGTTGCGAACGACAATGCTCCAGAGTACGCGCTCCGACCAGGATTCCTGTCCACCTCGGCGCTGGCAACGGATCAAGGCAGCAAGCTGGGGCTCTCCAAAAACAAGAGCATCATCTGCTACTACAACACATATCAGATTGTGCAGTTCAATCGCTTGCCTTTGGTAATCAGCTTCATCGCAAGCAGCAGTGCCAACACAGGTTTGATCATCAATCTTGAGAAAGATCTCGTTCCCTTGTTTGAGGAGCTGCGGCAAGTTGTGGAGATCGCATAGGAATGCATCCAGGATATCTGGGGATCTGATGTTCTCCTCACATGAGTTCGGGCAGACTTGCAATCACAAATACAGCGCTGGTTCAAcacgtcacacacacacacacgtctgtgATGAACTGAAATGCgttgccgtgtgtgtgtgtgtgtgggaaaaGCATAGAAATTATCCCaactttattttcagttgtttgtatactgtatataaacgTGTTTTGTTATAACTTTATTGGCCCAAGGTCACAGGCTACCTGCTGTTTGAACTCATTCcagcaaaatattaaaaatataatatgttttatgtttttgttgtgtagATATTGGCTacattaaagtaaagtaaacttAATCTTTCATGTAAAATGGTAGGGACTTGCAGTAAAGGGACATATCAGTGTTTTTACAGTTGTTTAGAAAGACATTGGATACCTATCTGTTTACATTAATagttaaaatctaaataaataaatatatcggATCAA

Function

NR:

description
ragulator complex protein LAMTOR3 precursor

GO:

id name namespace
GO:0034613 cellular protein localization biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0016310 phosphorylation biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K04370 LAMTOR3, MP1, MAP2K1IP1; ragulator complex protein LAMTOR3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017887 True 1290 mRNA 0.39 5 26988294 26992258

Neighbor

gene id symbol gene type direction distance location
AMCG00017884 dapp1 coding downstream 2455 26978060 ~ 26985839 (-)
AMCG00017885 NA coding downstream 57701 26922794 ~ 26930593 (-)
AMCG00017880 zgc:110204,LOC107688011,LOC107710476,LOC107589116,LOC107716030 coding downstream 168293 26794801 ~ 26820001 (-)
AMCG00017879 NA coding downstream 280162 26677257 ~ 26708132 (-)
AMCG00017878 si:dkey-155h10.3,LOC107569420,LOC107747559,LOC107667066,LOC107666522 coding downstream 338226 26642382 ~ 26650068 (-)
AMCG00017891 NA coding upstream 298295 27290553 ~ 27310145 (-)
AMCG00017896 NA coding upstream 375961 27368219 ~ 27395660 (-)
AMCG00017894 NA coding upstream 408246 27400504 ~ 27408557 (-)
AMCG00017893 NA coding upstream 423316 27415574 ~ 27426232 (-)
AMCG00017895 NA coding upstream 435221 27427479 ~ 27432576 (-)
G93843 NA non-coding downstream 489117 26498914 ~ 26499177 (-)
G93816 NA non-coding downstream 634570 26353517 ~ 26353724 (-)
G93802 NA non-coding downstream 729927 26258096 ~ 26258367 (-)
G93718 NA non-coding downstream 1178441 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 1470694 25517286 ~ 25517600 (-)
G94008 NA non-coding upstream 770428 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 786779 27779037 ~ 27784050 (-)
G94060 NA non-coding upstream 1101210 28093468 ~ 28097158 (-)
G94073 NA non-coding upstream 1427658 28419916 ~ 28420262 (-)
G94074 NA non-coding upstream 1432774 28425032 ~ 28425243 (-)
G93796 NA other downstream 878220 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 880489 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 972352 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 1030646 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1970082 24997544 ~ 25018212 (-)
AMCG00017902 NA other upstream 845993 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 1106647 28098905 ~ 28144589 (-)
G94172 NA other upstream 1881903 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 2276977 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 3593471 30585729 ~ 30596417 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G261969 NA non-coding CI01000063 null 399219 ~ 399448 (-)
mexican tetra (Astyanax mexicanus) G219144 lamtor3,mk1i1 non-coding NC_035921.1 CM008324.1 25178653 ~ 25187678 (+)