Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017888 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 27000562 ~ 27001794 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| id | description |
|---|---|
| K04253 | RRH; visual pigment-like receptor peropsin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017888 | True | 404 | mRNA | 0.47 | 3 | 27000562 | 27001794 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017881 | NA | coding | upstream | 33310 | 26939374 ~ 26967252 (+) |
| AMCG00017882 | gabrb1,LOC103364303 | coding | upstream | 109731 | 26871001 ~ 26890831 (+) |
| AMCG00017883 | NA | coding | upstream | 170392 | 26829576 ~ 26830170 (+) |
| AMCG00017873 | gnpda2,LOC106521223 | coding | upstream | 542932 | 26453244 ~ 26457630 (+) |
| AMCG00017871 | grxcr1,LOC107601454,LOC106600617 | coding | upstream | 749916 | 26236014 ~ 26250646 (+) |
| AMCG00017889 | pitx2 | coding | downstream | 267441 | 27269235 ~ 27278351 (+) |
| AMCG00017890 | elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 | coding | downstream | 349894 | 27351688 ~ 27360732 (+) |
| AMCG00017892 | NA | coding | downstream | 409566 | 27411360 ~ 27415163 (+) |
| AMCG00017897 | NA | coding | downstream | 743119 | 27744913 ~ 27768328 (+) |
| AMCG00017901 | NA | coding | downstream | 772059 | 27773853 ~ 27787082 (+) |
| G93891 | NA | non-coding | upstream | 12527 | 26983969 ~ 26988035 (+) |
| G93878 | NA | non-coding | upstream | 84081 | 26915913 ~ 26916481 (+) |
| G93842 | NA | non-coding | upstream | 501392 | 26498712 ~ 26499170 (+) |
| G93736 | NA | non-coding | upstream | 1046822 | 25953504 ~ 25953740 (+) |
| G93735 | NA | non-coding | upstream | 1048185 | 25952068 ~ 25952377 (+) |
| G93938 | NA | non-coding | downstream | 282928 | 27284722 ~ 27285066 (+) |
| G93986 | NA | non-coding | downstream | 696930 | 27698724 ~ 27700728 (+) |
| G94039 | NA | non-coding | downstream | 839259 | 27841053 ~ 27841261 (+) |
| G94055 | elavl2 | non-coding | downstream | 1095939 | 28097733 ~ 28099214 (+) |
| G94057 | elavl2 | non-coding | downstream | 1098939 | 28100733 ~ 28102094 (+) |
| AMCG00017886 | NA | other | upstream | 3110 | 26992891 ~ 26997452 (+) |
| AMCG00017843 | NA | other | upstream | 1948188 | 25050309 ~ 25052374 (+) |
| AMCG00017829 | smim14,LOC107700293,LOC107757606 | other | upstream | 2284832 | 24705270 ~ 24715730 (+) |
| AMCG00017817 | phox2b,LOC101065912,LOC106604546 | other | upstream | 2888452 | 24108560 ~ 24112110 (+) |
| AMCG00017783 | NA | other | upstream | 3670993 | 23301615 ~ 23329569 (+) |
| AMCG00017898 | kcnip4,LOC103360335,LOC100711851,LOC102780455 | other | downstream | 471087 | 27472881 ~ 27697379 (+) |
| AMCG00017910 | NA | other | downstream | 1630098 | 28631892 ~ 28646750 (+) |
| G94275 | NA | other | downstream | 2431618 | 29433412 ~ 29450347 (+) |
| AMCG00017978 | NA | other | downstream | 3818075 | 30819869 ~ 30831867 (+) |
| AMCG00018012 | NA | other | downstream | 5405635 | 32407429 ~ 32425235 (+) |
