AMCG00017890 (elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181)


Basic Information

Item Value
gene id AMCG00017890
gene name elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27351688 ~ 27360732 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017890
CAGGAAGAAGTCCTTTTTATTCTCTGCTCTTTATGCTGCTTTTATATTTGGTGGTCGTCACTTGATGAAACAGAGGGAAAAGTTTGAATTACGTAAACCTCTAGTGCTTTGGTCAATGAGCCTTGCTGTCTTTAGTATTTTTGGTGCCGTGCGCACTGGAGGATACATGGTGTATATACTGATGACCAAAGGGCTAAAACAGTCAGTCTGCGATCAGAGTTTCTACAACGGACCAGTCAGCAAATTTTGGGCTTATGCCTTTGTCCTAAGTAAAGCACCAGAGCTAGGGGACACGATATTTATCATCTTGAGGAAACAGAAGTTAATCTTCCTCCACTGGTACCATCACATCACAGTTCTGCTCTACTCCTGGTACTCGTACAAGGACATGGTAGCCGGCGGGGGCTGGTTTATGACTATGAACTACTTGGTCCATGCGGTCATGTACTCTTACTACGCCCTGCGCGCGGCCGGGTTCCGGGTGTCGCGCAAGTTCGCCATGTTCATCACGCTGACGCAGATCACGCAGATGGTGGTGGGCTGTGTGGTCAACTACCTGGTGTTCTCCTGGATGCAGCTGGGTCAGTGTCCATCCCACGTGCAGAACATTGTGTGGTCCTCACTCATGTACCTCAGCTACTTCGTGCTGTTCTGCCAGTTCTTCTTCGAAGCGTATATCCACAAGACCAAGAAAGACGTGGGCAAGTCTCAGTAGGAATGGGCAGCAGGGCCTACAGCCACGGCTCCAGGGGGCACTGGGAGGGACTGCGGGAggaaaaagttgtttttgtcttttttgggAGTGGTGGCTCTTGTCGGAGGGGCACAGGTAGCTGTATCCAGCACAGCTCACACGGCCTAACCTGCCGACAGCAAGCGTTTCTCCACTCGGTGTTTCGCGGACCTTTTCCAGACGGGGAAAAAGACGCGTGGTGACATTGACCTGCTCACAAATTATGGGCTGGTGTGAAAAAAAGAAGATGAACACCCACCCTTCAGGCGCTGCAGTCAACATCTTcatgaaaatcacaaaacacaaacgGTGAAGGTCTTATTAGAGCTTGGGGGCTGAGtatcaatctttttttatttttaatttgtagattttagttttcatacatatttttcaaagaaCAACTTTGGTATTAAAGTACCTCTTACTGGacctgggggaaaaaaaaattgtacacGAGCTGTAATATTCTTCaaggtaaaatattttttcaaatatccCATGCAGATGTTCAAGCCATTAGAACCTGTCCAAATAGGATAAGATGAGATCTGAACAAAGCAAAAGGAATTGGTCAGTTGTCTCATGTGAAAAGTGCTGAAACGAAACCTTGGGGCATCATAGGGGATTTTCGGTTTCAACATGAAagcattattttgatttgactGTCTGCAGTTTAATTCTGgagatttgtttgtatgttgcGTATCCTTCCGATCCCCAACACTGTTAAATGTACGATGCTTAATCGCTTTATGAAATCAATCCTACTTCGCTTATTTAGTACCCAAGACATGACCATACATAGCCTTTTAAAAACAGCCATATTTAGTTTGTCAAGCATTTACCTGAGTTTTATCTAAATGCCTCCATTCTTGCCAACATTTTGGAGTGAATCATTTATTGTTGCATCGTGGATCTCCCAGGTCCTCCTATACCAGGtcttattaaacaaaatgactgGTGAAAGAACCTCACCTACTTTTAATAGCACCTCTTTGAAATATGTGgttttttgaaattgaaagataacttcCAAATCCAAGTGTTAATGTCATGTATTCTCTCACAtttacatagttttaaaatacatcaaacaaCAGTGTTAGTGCATCATGGTTTTCAGTCTTATTCAGAAgaggaaaataatttgaatggttACATTGAATGGAAAAATGTTTAGGTCTGTTACAAATTAAGGTCATGTAATATACATAGTGCAATGACATGCAGTCACAGTATCTGCAAGAGCTTATTCATCAGCTAAAATATTCAACCACAGCTCACAAAAACAAGCGAGAAAACCATAAatactctactctactctaggattgtttatttatattcaaataatgtttgctttaaaaGACTACTCATGGGATAAATCATAAAAGGCTGCTTAATACTTTTAAGCGATACAATGatgtaaaaagaaatgtacTTCTGATTGTGCACTTCCGATGAGCCGCCGTCAAGCTGCTCTTGCTTATTTATAATCTCACTAGATCGCTGCTTTCGATTTCTTGTAGGAGAAATTCAAGCCGTTCAAGAAAGTAGCACTTTACAGTCTGCAGAGTTCGAAGCCATGACCATATTTCTGTCTTCATTCTTAAGATGTTTTATGCTCGTCTATGGAGCAAACGCCAAGAACAAGAAACACTGGAGATCAATCGAAACAAGTCGGACGTATTCAGTTAATCCGATGCACACCATATCTGGAGCTGCACTACTGTATTTAGTTGACACATGCAGATCACaggcaaaaaaatacatatattgagCTAGTCATAAATTAAAggctttattgtattttaattttgtatctatttttttaaacttaaaatagcCAATAGTCTGAATGAAGACTACAGTATTAAAGATGCGGTGTTTAGCTTTAAGACTAGCTGCCAAGGGAAATTAAGAAAGGCTTTGTCCTGgtgttacaaaacaaacacacaaacaaactgtgAGAAGAGGGATATTATTTACATATCAtgttctgtttctctgttttaatCAAGTGACTTTAATTACAAGTGTTCTGTCAGACATTGTTGATGCAGTATTGATGTAGTAGACATGTGAAGGTATAAGTGTTACCCAGCATTCCCGAATGCATTGCTGGTCGGCTGAGGAAGAAGAGAGCAgttgcatttgtattgtattt

Function

symbol description
elovl6 Predicted to enable fatty acid elongase activity. Predicted to be involved in fatty acid biosynthetic process and sphingolipid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axis; mesoderm; nervous system; and optic vesicle. Orthologous to human ELOVL6 (ELOVL fatty acid elongase 6).

NR:

description
elongation of very long chain fatty acids protein 6

GO:

id name namespace
GO:0042759 long-chain fatty acid biosynthetic process biological_process
GO:0019367 fatty acid elongation, saturated fatty acid biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
K10203 ELOVL6; elongation of very long chain fatty acids protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017890 True 2900 mRNA 0.40 3 27351688 27360732

Neighbor

gene id symbol gene type direction distance location
AMCG00017889 pitx2 coding upstream 73337 27269235 ~ 27278351 (+)
AMCG00017888 NA coding upstream 349894 27000562 ~ 27001794 (+)
AMCG00017881 NA coding upstream 384436 26939374 ~ 26967252 (+)
AMCG00017882 gabrb1,LOC103364303 coding upstream 460857 26871001 ~ 26890831 (+)
AMCG00017883 NA coding upstream 521518 26829576 ~ 26830170 (+)
AMCG00017892 NA coding downstream 50628 27411360 ~ 27415163 (+)
AMCG00017897 NA coding downstream 384181 27744913 ~ 27768328 (+)
AMCG00017901 NA coding downstream 413121 27773853 ~ 27787082 (+)
AMCG00017900 LOC107700316,LOC106919300,LOC106948245,LOC105915642 coding downstream 450490 27811222 ~ 27837126 (+)
AMCG00017904 NA coding downstream 547012 27907744 ~ 27909564 (+)
G93938 NA non-coding upstream 66622 27284722 ~ 27285066 (+)
G93891 NA non-coding upstream 363653 26983969 ~ 26988035 (+)
G93878 NA non-coding upstream 435207 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 852518 26498712 ~ 26499170 (+)
G93736 NA non-coding upstream 1397948 25953504 ~ 25953740 (+)
G93986 NA non-coding downstream 337992 27698724 ~ 27700728 (+)
G94039 NA non-coding downstream 480321 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 737001 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 740001 28100733 ~ 28102094 (+)
G94069 NA non-coding downstream 1082034 28442766 ~ 28444925 (+)
AMCG00017886 NA other upstream 354236 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 2299314 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 2635958 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 3239578 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 4022119 23301615 ~ 23329569 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 112149 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 1271160 28631892 ~ 28646750 (+)
G94275 NA other downstream 2072680 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 3459137 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 5046697 32407429 ~ 32425235 (+)

Expression


Co-expression Network