AMCG00017892


Basic Information

Item Value
gene id AMCG00017892
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27411360 ~ 27415163 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017892
CGGCTTCAAGGCGACAGCGCTGGACGACCAGATCGCGTTTAAAAAGCCCTGACCCTCGGACTGgacatcaatacataaaaacatgtcGGCCTCACCCCCTGCTGTGGATAGCAGACCGATATCGGACCGCTGGGACATTGAGgaatgggagaggaggaggagggtggatCATAGACAGCGAGAGGAACAGATGGCTGAACACAGGGGGCAACATGTCCCAGAAGAGACCCCTGTCGACGACTGTGAGAAACTGGGGACTCTGTTTGGAGAGCTTAACAAGTGCCTTAGAAGAGCTGGATTTACTCAGATGTACTTTGGGGACAAAACCGTGGAGCCGGTGGTGGTGATTTTCTTCTGGCTGATGCTGTGGTTCCTGGGGATTCAGGCCCTGGCTCTTGTAGGCGTTTTGTGCATCGTCATCATTTTTATTCAGAAGTGATCACCTGCCAGTCCTTTCTAAAAGCGGATTGTGTATCTTCTGTGTAGCCGTGCACTGCCATCCAAACACTAAGTCCAATGTTTGCAACAGATGCAAAGGCAAAAAGTCGGGTTTTATGAATCACTGGATATTGTGATGCCGCATCCCTAACATTGTACGTAGCTGTGCACTGCCGCATCAAATGAAATTGATCTGTACAAATTGAAAAAGTAAAtctacttttaatatttttgttagtttctACCAAAGAATCTTGGAAGGTTTCCCAGATATGACAAGTTTCTGCTCCTTAATTCTCGAAAGCATGCCCGAGTCCACTGACCCAAATCAATGAAGTGGTTCATGAAATCTGAAGCCCTTGGGTGGAGTGTGGTGCAAGAACCATTTCCTGCGCAAGATGACTGCAACCGCTGCATATCAATTCTATTAAACGAGGCAAATGTGATTGAGATCAGGTGCCAACACGGATGCATATTTTAATCTATGAAAGCACTTCTACTGCAAACAGGATGAGAACATGATAGTTCTCATAGTTTATACTTCTACTCTTTACATCGCAAGTGAGGATATCCTGAACCATGCATCCTCTCAGATTTTAACTCaactgtttttctgttgtgtacAAAGTACTAGCTGGAAACATGATCTTAATTGGATCAATATTTTACAAGTTAGGAAGGATCGAAGATCTAGCTAATGAGCAGATCCTCTAGAATCCAGTCTGCAAAATTTCAAGCTCAGTTTGAGCTATTGAGTAATTTCTCATTAGTGCTAGCTGAGCGGATGCTAGATAAATAGATTTCTACTGATAACTTGCTCTGTTAAAGGTTCATGACTTTTCAAAACCTCTTCATCTAATCAGAAATACAATATCAGATAGGCCGGTCAAGAGGCCAAACCTTCAGACAGAGAGAGCTTCATATTTGTTCTCATTTAAAAAGCTATGTGTCTCCTTAGCAGTGTGTTCTTACAATTGATATAACTGTGcactctttttgtgtgttttaaattgtgattattatttttttaacattaagttCTGAAGCCAGCTAAAGGGCATTATCTTTCAATCTCATTGTAGtggatttatataatatttattctaATACAATAATTGACCATTACCTTATTTCTTCTCAATCGGACAGTCCAGCCTCAGATTGAAATTTGGTCCCTTCCTCAGAATGAACACCACATTAAACCATGTTGATTCAAATATGAGATGCTGAGAGTTCACTTTAACGTTTAGGTCTTCTGACTTGTTTGTAGTGACCCAGTTCTATGGTTAGCAGCAATAGCAGGTAGTATGGTACATTTAGATTAATCAAAGAACAGACATGTATTCGTCTAGTTAGCATTGCGATCTTTCTCAATCGTTTAAAATGAGTGTTGCATTCAGTACTTTCAGGGATAATCATAATCTACCAAATTAATGAGGTGTTTGGAAATGTCAGTTTTAGCACTTTCAGGGTTACGTGGGTATCACGGGTGAAAGGGTATAATGAAGTTTGTATGATAGATATAGGTTCACTTGCTGTTTTTCATATAGTCAACACCCCTCTCAGAAAGAAAATGGATTACCCTCTGGATAAACCACCTAAAGGGATAAGTAGACGCCTGTACCAGTCCATAGTCTGTCTAAttgttgtcaaaacatttttaattgatttaagatACGAGAGATAACGAACAACGTGATGCTCACACGTTTCGACCCATTTTTCTTCAGAGCATCCAACCCCTGTAGGAAATGTAAAACCCCAGTTATCTCcatattttgaattgcactTTATCGGCTTATCTTGGCAGGATCATGCTTTTATGGGACGTAGGAAATTAAAGCCAACGCCCCCGAGCACTTGTGACTTTGCCCCTTCTGCCTTGCAGCACTGGCCTTCGATTTTTCTAAAGATAAGTTTCCCCTTGTgataaatacagtgaaattagatttgtaatatattgtgtgttgaaaagcatttgaaagTAACATTCAAGATATACTTTTACATAATTAAGATTTTAAGAGGGCTACATTTTATCAATATGGATGAGGTGAAATTGCACGGACTACAAGACttgcagttttatatatatgtatatataagcgtgtgtttgtgtgtgtgtgtgtgtgcatgcatagAATGGGTTCATGAAAGTAGTTCCCACGTACAGGACATTTAAAAGACTTGTAACAAACTGTGGCATTGTAAAGCATTCACTTTTGGTTTACAGTGCCCAGAAAGTTGACGGGAAGGAAAAGGATTGTGCCATTTTAGTTACCATTGAGGAAAAAACAACTTTTGGAATttgtacctttttatttattatatatattttttgagtGTGAACTTACTTGACTACATGAATGTAATATATCTGACTTAGGAGAAggttcctttttttaaaaaagcactgCATTTTATGAATGGAATCTCTTacaatgttgaaaataaactgtatactCCACTAAGATCTGAAGTACAtcctatttaaataaagattttttaAGAATGCAATTacaaaagtttttattttttggttttagcTACTGTTTGTAACAATGGTGAGAAATTAAAAATCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017892 True 3021 mRNA 0.39 2 27411360 27415163

Neighbor

gene id symbol gene type direction distance location
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding upstream 50628 27351688 ~ 27360732 (+)
AMCG00017889 pitx2 coding upstream 133009 27269235 ~ 27278351 (+)
AMCG00017888 NA coding upstream 409566 27000562 ~ 27001794 (+)
AMCG00017881 NA coding upstream 444108 26939374 ~ 26967252 (+)
AMCG00017882 gabrb1,LOC103364303 coding upstream 520529 26871001 ~ 26890831 (+)
AMCG00017897 NA coding downstream 329750 27744913 ~ 27768328 (+)
AMCG00017901 NA coding downstream 358690 27773853 ~ 27787082 (+)
AMCG00017900 LOC107700316,LOC106919300,LOC106948245,LOC105915642 coding downstream 396059 27811222 ~ 27837126 (+)
AMCG00017904 NA coding downstream 492581 27907744 ~ 27909564 (+)
AMCG00017905 NA coding downstream 501263 27916426 ~ 27919140 (+)
G93938 NA non-coding upstream 126294 27284722 ~ 27285066 (+)
G93891 NA non-coding upstream 423325 26983969 ~ 26988035 (+)
G93878 NA non-coding upstream 494879 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 912190 26498712 ~ 26499170 (+)
G93736 NA non-coding upstream 1457620 25953504 ~ 25953740 (+)
G93986 NA non-coding downstream 283561 27698724 ~ 27700728 (+)
G94039 NA non-coding downstream 425890 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 682570 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 685570 28100733 ~ 28102094 (+)
G94069 NA non-coding downstream 1027603 28442766 ~ 28444925 (+)
AMCG00017886 NA other upstream 413908 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 2358986 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 2695630 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 3299250 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 4081791 23301615 ~ 23329569 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 57718 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 1216729 28631892 ~ 28646750 (+)
G94275 NA other downstream 2018249 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 3404706 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 4992266 32407429 ~ 32425235 (+)

Expression


Co-expression Network