AMCG00017894



Basic Information


Item Value
gene id AMCG00017894
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27400504 ~ 27408557 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00017894
TGTACTTGCATATATCATGGCAGGAGTGATGGGAGTGGAACAAGATCAGTATTGTGCAATGACCCAGACATGTCTGACATCCCAGTCAACGTCCCGGTTGACACCGTTAAACTCCGTGTGGAGAAGACGGTGGTAAGAAAGATCCCCACTGAAGCGTTTTACTACCTCGTGGACCTGAAATATCTGTGGGTGACTTACAACTCCATCTCCACTATTGACTCGAGTAGTTTTTACAATCTGAAAGTCCTCCACGAATTACGACTGGACGGAAATCTGATTTCCACCTTTCCCTGGGAGTCCCTGCAAGAAATGCCTAATCTCCGAACTTTGGATTTACACAATAATAGGCTTTCCACAGTCCCTGCCGAGGCAGCACAGTATATCTGGAATATAACCTATTTGGACATTTCCAGCAATAAACTGACCACACTACCACCAGATTTAATGGACATCTGGCCTCCTTTTTCTGGAACGTCGATCACAGCCACAGACTCTCCTCAGCGTGTGATATTGGGTTTGCAAGACAACCCATGGTTCTGTGATTGTCGAATCTCCAAACTGATTGAGCTCTCGAAGATCTCCGAGACATGTGTTGTGCTGCTTGATCCACTCCTGACGTGCAGCGGGCCTGAGAACCTGTCAGGTGTCCCTTTCCAGAGGGCTGAGCTGGAGCAGTGCCTCAAACCTTCGGTGATGACCTCGGCCACGAAGATTACCTCTCCCCTGGGCAGCAACGTGCTTCTGCGTTGTGATGCCACCGGATACCCCACACCAGCTTTGATCTGGACCAAATATGACAGCTCTCCCGTTAACAGTACAGTTGTACAGGAGTCTCCAGGGGAGGGAATCCGGTGGTCTATATTAAGCTTAACTGGGATTTTATACAAAGATGCCGGGGAATACCATTGCAAGGCTAAAAACCTGGCTGGGATGGCCGAGGCCTCCATCACTCTCACAGTGGTGGGCGTGATCACCACAACCGTGCCACCGGCGAAATTCCCTAAGAGGCTGATCAGTGAGCAAACCTCCACTGGGCAGAGTCCGCCAGAGCCGGCTGTGTTAACAACAACTGCTGTAACAACCTTGAAAACTTCTACAACCCCTGCTACTACAAAGCCCAGTGCTGCCATGAAAAATAAACCGATGCCCAACACTCAGCAGGGGGCTCCCCAGGACGGGGCAAAGCCGGTGAAGGGGCCGCAGCTGAGCGTTAACAGAAAACCACAGCAGGAGGAGAAGGCCAAGAAAACTGGCAGCACGTCAGCTAACGCCACGTCAAATGCGGTTGTCCAGAAGTTGGCCATCAGAAACATGCAGGTCGAGGATCAGAGCCTGGAGAGTGCAGTGCTGACATGGAAGGCAGACGAGGCTCAAAGATATGTCCCCGTGAATGTGGTTTATTCGTCATTCGgggaaaaggagaaaagaacCGTGAGTACAGAAGTGGGGAAGAACAAAATAACCCTggacaaattaaaaccaaacacaaaatacatggcTTGCTTGATCCCTAAAGGAAGTCAACCCCGAAAGGACCAGTGTATCACGTTCTCAACAATGGAGCCGGTCGTAGAGGAAAATCAGACCCAGAGTCAGCTTTTAATCATCGCCAGTGGCATCGCTTGTGCTCTGGCATTGCCGCTGATTATCGTGCTGCTCTACAAGGTCTTGCAGCTCTGCTGTAAAAAATCTGCTTCTCCTGGGGATGAAGACCTCTCGAAGGACACCTATGTGAAGTTCGAGACGCTCTCTCTGAAACAGAGGACCATGGCGGCGACGGGGGACCTGTGGGCACGCAGACACACCACCGAGTCGGAGAGGATGCTGCTCTGTTCCAGGTCCAGCATCGACTCGCAGATGACTTTTAAAAGCGACAGTTCCAGATCTGAATACTTGTGCTGA

Function


GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00017894 True 1902 mRNA 0.51 4 27400504 27408557

Neighbor


gene id symbol gene type direction distance location
AMCG00017896 NA coding downstream 4844 27368219 ~ 27395660 (-)
AMCG00017891 NA coding downstream 90359 27290553 ~ 27310145 (-)
AMCG00017887 mk1i1 coding downstream 408246 26988294 ~ 26992258 (-)
AMCG00017884 dapp1 coding downstream 414665 26978060 ~ 26985839 (-)
AMCG00017885 NA coding downstream 469911 26922794 ~ 26930593 (-)
AMCG00017893 NA coding upstream 7017 27415574 ~ 27426232 (-)
AMCG00017895 NA coding upstream 18922 27427479 ~ 27432576 (-)
AMCG00017899 NA coding upstream 290344 27698901 ~ 27723731 (-)
AMCG00017903 NA coding upstream 433655 27842212 ~ 27844771 (-)
AMCG00017907 NA coding upstream 1025475 28434032 ~ 28443288 (-)
G93843 NA non-coding downstream 901327 26498914 ~ 26499177 (-)
G93816 NA non-coding downstream 1046780 26353517 ~ 26353724 (-)
G93802 NA non-coding downstream 1142137 26258096 ~ 26258367 (-)
G93718 NA non-coding downstream 1590651 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 1882904 25517286 ~ 25517600 (-)
G94008 NA non-coding upstream 354129 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 370480 27779037 ~ 27784050 (-)
G94060 NA non-coding upstream 684911 28093468 ~ 28097158 (-)
G94073 NA non-coding upstream 1011359 28419916 ~ 28420262 (-)
G94074 NA non-coding upstream 1016475 28425032 ~ 28425243 (-)
G93796 NA other downstream 1290430 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 1292699 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 1384562 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 1442856 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 2382292 24997544 ~ 25018212 (-)
AMCG00017902 NA other upstream 429694 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 690348 28098905 ~ 28144589 (-)
G94172 NA other upstream 1465604 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 1860678 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 3177172 30585729 ~ 30596417 (-)

Expression



Co-expression Network