AMCG00017897


Basic Information

Item Value
gene id AMCG00017897
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27744913 ~ 27768328 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017897
ATGAGACCAAGCACCTGGACAAACCTGGCGTTGGCACAGGCGGGAAAGGAGAccagctctctctcacctggaGAAATCAGAGAAAGCAAGGTGCTCCCTTCTCCCACGAGAGCTGTTAAGAAGCCAAACACAAACACGGTAAACAGTGCCGCCTGTACGACACACTGTCCCCTGACTCTCGCTGTGTTCCTGCAGGTGGACGAGGGAGGACGGGCCGCGGCCGCCGGGCTCTGCCAGGGCGATGAGGTGGTGTCGTTGAATGGGGAGCCCTGCGCGGATCTGTCCCTTGCCGAAGCTGTGGCTCTGGTCGACGCCCCCGCTGACAGTCTCCAGATGCTCGTCAAGAGGTGTGGCGTCCTGGAGATCTCCGACACCCCATTAGAGAGGACATATTCCAAGGAGGCCGGGCCCGGCGAGGGTCTCGAGAGCACTACGCTGCAGATCTGGCCCCCGGGCGCCCCCGCCAGACAGCTGTACCTGTCAGAGTCGCAGGACGAGGCTTACTACGGCGAGACGGAGAGCGACACTGAGCTGCCCGGGGGCGCCAGGCTGGGCCGGGAGAGGGAGCACCCCAGGGAGAGGAGCAGCGCGGGGGTCCCTCTGAGCGGGAGTTTCACACCTGGCAAGGTGGTGGAGCTGCAGCTGTCCCTATCAGACCACAGCCTGGAGGACCCCCGCGGCAGAGGGGGTAGCACCTTGGGGGGCACACTAGAGAGAGCCGGCAGCCTGGACCTGCCCCCCGCCGGCTTCCACACGGAGATCTTCCAGACCAGCACCAGCACGGCCACCTCCACCCAGTCCTTCAGCGTGTTGCGCCGTGGTAGTGGGCGGGGGGGCGATCCGCTGAGCTCCTCGTCCTCGCTGGGCCAGGTGGAGGTGACGCTGCAGCCGCCCCGGCGGGCGCGGCGCCGGGAGGAGGTGTTCTTCTGCAGGACCGAGTCCAGCCTCAGTGGGTGTGTTGACTCTCCAGAGGAAGGAGGGCCCAGAGAAGCACCTCCTGCTTCTGTCTCCTTTGGCATTTCAACAGAGGGAGCGGGGCCGGCAGAGGAGTGGGACTCGGAGTCGGAGAGGGATCTCAGCAGACCTGACAAGCACCACGCGCGGCACTCAATCAGCTACGGGACTGGGGAGCAGGAGCCcaaggacgaggacgaggaggacGAAGGAGACGCCATCGAGGTCACCTTTCTGGCCACCAGCGAGTCGGAGCTTGACGAGGATTTCTTCACCGATGTCCAGCGCCGCGGCAGCATTGTAACGTTTGACTGGGACACCGGCCTACTCGAGATCGAGAAGCAGCTCGGCGACGGCGAGGAGATGGAGCGTCTGCCGGAGACCAAGGGCAAGGGGGCACTGATGTTCGCCAAGCGCCGGCAGCGGGTGGATCAGATCACCGCTGAACAGGAGGAAATGAGGAGGCAGGGGATCCCCGTGGAAGACCACCGGGACATAGAGAGCATCCAGGTCACCCAGCACAGCTCCTACCAGGTGCAGGAGAACTCGACGTACACACAGGCCCGGACCGAGCACCAGGGCCAAGCCTACATAGACGTGCAGAAGCAGACgcagcagcagaagcagcagtACAGCGTCTCTCACAGTATGAATGGAGTGGTGCATCACCAGACCAGCGAGGTGCAGAAGTCCATCGTCACCAACAAAACGGCCCGGCCCTTTGGCGGGGTTCAGAACAGGGTGCCTGCGCCCTTCTCGTCCACGCGGAGTGTCAACAGCCCGGTGTCGGAGCCGCAAGGCTTCTCGGATAACAGATACAGGGTGGTCCTTCCCCCCGTTGCGGTCAACACGCACGCCCAGATCTGGTCGCCTACGGGCTCCGGGGAGCAGATTGCCTCCCGGGATGAGCGCATCTCTGTGCCTGCCATCAAGACGGGGATCCTCCAGGACACCAGGAAGAGGAGCACGTCAAAGCCTATGTTCACATTCAAGGAGCCCCCCAAAGTGTCTCCAAATCCTGATCTGCTGAACCTGCTCCACAAAGGTGACAAGCGCCAGACCGGCTTCGAGTCAGGCCCGGAAGAGGACTACCTCAGTCTCGGTGCCGAGGCCTGCAACTTTCTGCAGTCCCAGGCGGTCAAGCAGAAGACTCCTCCGCCTGTTGCCCCGAAGCCCTCCATCAACCCAGCCTCCCCACCGTGGTCACCTCAGCCTCAAGCTGCCAACCAGGCGTCCTCCCAGCCGACACTTAACGAGGCTCACACTGCTGTGACTGCTGCTGCGGCCGTCCCACCACAACGACAACAAGCAGAGCACACCTGGAGTCCATCTCAAACGCAGGCCCAACCAGCAGAGCACACTTGGAGTCCACCTCAAAAGCAGGCCCAACCAGCAGCTCCCCAGCAAACCACTGCTGCCGTATGGAGCCCAGCTCAGCCACAGGCCCAACCAGCAGCTCCCCAGCAAACCATTGCAGCTGTATGGAGCCCAGCTcagccacagcagcagcaacaaccaCCAGCGAGGGCCCCAGCTCAGACATACACCCCACCACAGCAGCTCGCCAACACGTGGAGCCAACCGCAATCCCCCGCCAGCGCGCCGCTCCCCGCCCGCTCGGTGGCCACCGCCTACATGCCGAGAGCGAAGACGCCCCCCACCACTCCCATCAGCAATGTGGCCTCGGCCGGGGGCATGGGGCCAGCCTTCGAGATGCCAGCTCTGCGGGGGAGAGGCGCCGAGCTCTTCGCCAAGCGGCAGTCCCGGATGGAGAAGTTCGTGGTGGACTCCGAGACGGTGCAGGCCAACAAAGTGCGCTCGCCGTCCCCGACCCCGTCGCTGCCCAACTCTTGGAAGTTTTCACCCAACGTCCGGGCACCCCCTCCGCTGGCCTACAACCCCATCCACTCGCCCTCCTACCCGCCCGGGGCCATGAAGAGCCAGCCGCAGTCCAGCACTGCCGGAAAGACCAAGACCAAAGGGAAAACCACCACCAAAGTCATGCACGCCCTGGACGTCATGAAGCACCAACCCTACCAGCTGAACTCTTCCCTCTTCACCTACGGCCCAGCGACTGATGCCAAGGGCCCGGCTCCCAAGTCCACCCCGGCCCCTGCCAAGCAGCCCCTCCAATACGAGCCCTCCGCCGCCGTGAAGCCCGCCGGGCACATGAACGCGGCGTATCCGGTCTCCCAGCCGCAGCCACCCCACTACGGGTTCGAGCCGTCTTCGCCTGCGATACACGATGGTTCCTTCAAACCAGCCGCCAACGCCTACGTAGTCCCCAGCTTCACGTTGCCCCCGAAGGCCGAGTCCATTGCCGGGGTGTATATGGCTCCACGCCCGAGGTTCTCCGCGAAAAAGTCTGGAGTAGCAGCACAGGAGATCAGCCGGCGCTACTCCCTGTCTCTGCCCCGGAGGATGCCCTCGATGTCCGGCTACGACTCCCCGGTGCACAGCCCGGTATTCATGCCCTCAAAGGGGCCCTTCGACCGGCAGCCGTCCTGGATGGATAAGAGCGTCAAGCCGCCTTCGCCCTGGGAGGCCGCGGCCCGCAACCCCCTGGGTCTGGTAGACGCAGCCTTCTCCTACCAGAACCTCCAGCAGTCCATTGCCTCCAACGTCATCTCCGCCGCCCACAGGAAGTCCCTGCCTGAGCCGCCGGCGGCGTGGAAGGATAGGGTGTCCTACGAGTCGTCACAGAGAGGCCGACTCCAGCACCAGCGATCCTCATCCTACACATCGCCCTCCAAGAGCTCCATGTCCGCCCCGGCATCCACCGTCCAGTACGGCTCCCCCTGCAGATACGCCTATCAGCCTCAGAGGTCAATGACTGATTCCAACATCCGGGGCTTGGGGGCGGGGCCTGACTATGGGGCGTACGGGCGGTCAGTGAGTGATCCAAACTATAACATCTATCCCCGGGCGTGGAGACGCCTCCCTCCTCTGCTGGCGACTCGAGGCGTCACGCTCACAGATGGGAAAGTGAAGGAGCAGACCACGTGA

Function

GO: NA

KEGG:

id description
K24066 SYNPO2; synaptopodin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017897 True 3960 mRNA 0.64 6 27744913 27768328

Neighbor

gene id symbol gene type direction distance location
AMCG00017892 NA coding upstream 329750 27411360 ~ 27415163 (+)
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding upstream 384181 27351688 ~ 27360732 (+)
AMCG00017889 pitx2 coding upstream 466562 27269235 ~ 27278351 (+)
AMCG00017888 NA coding upstream 743119 27000562 ~ 27001794 (+)
AMCG00017881 NA coding upstream 777661 26939374 ~ 26967252 (+)
AMCG00017901 NA coding downstream 5525 27773853 ~ 27787082 (+)
AMCG00017900 LOC107700316,LOC106919300,LOC106948245,LOC105915642 coding downstream 42894 27811222 ~ 27837126 (+)
AMCG00017904 NA coding downstream 139416 27907744 ~ 27909564 (+)
AMCG00017905 NA coding downstream 148098 27916426 ~ 27919140 (+)
AMCG00017914 NA coding downstream 905080 28673408 ~ 28692303 (+)
G93986 NA non-coding upstream 44185 27698724 ~ 27700728 (+)
G93938 NA non-coding upstream 459847 27284722 ~ 27285066 (+)
G93891 NA non-coding upstream 756878 26983969 ~ 26988035 (+)
G93878 NA non-coding upstream 828432 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 1245743 26498712 ~ 26499170 (+)
G94039 NA non-coding downstream 72725 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 329405 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 332405 28100733 ~ 28102094 (+)
G94069 NA non-coding downstream 674438 28442766 ~ 28444925 (+)
G94104 NA non-coding downstream 882820 28651148 ~ 28652294 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 47534 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 747461 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 2692539 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 3029183 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 3632803 24108560 ~ 24112110 (+)
AMCG00017910 NA other downstream 863564 28631892 ~ 28646750 (+)
G94275 NA other downstream 1665084 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 3051541 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 4639101 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 4692970 32461298 ~ 32466636 (+)

Expression


Co-expression Network