AMCG00017898 (kcnip4,LOC103360335,LOC100711851,LOC102780455)


Basic Information

Item Value
gene id AMCG00017898
gene name kcnip4,LOC103360335,LOC100711851,LOC102780455
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27472881 ~ 27697379 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017898
ATGTCCTCATTAGCAGAGCTGTGGACAGAGCAGTGCCTGAACTTCTGCCTCCGCACTGATCACTATCTCCAGCTCACTTCGTGTGACGGGTCTGAAGAAAACCACTCAGAACTCCAGCACCACCCCTGGACACCCCGGTCCTCAGATCTCAGTCCCACTGATGTCTTCAAGGATACGGAGCTGGTGATCAAAGGCAAAGAGTCGGGGAACGCCTGGGAGCGAAGTGAACTCGGGGGCAGCAGAGACATTGCAGATTACCTGCCCAAGAGGAAGAGGTGGCCCTTTGTACTGGTTGTGTTTCTGGGCTGTGTTCGGTACCGCTGTTACTCTTCTCACGCCGCCCCACTTTGTTTCACAGACAGCGTCGAAGATGAGCTGGAACTGGCCACCGTCCGCCATCGTCCCGAGGGGCTGGAGCAGCTGGAGGCACAGACCAAATTCACAAAGAAGGAGCTGCAGATTCTCTACCGGGGATTTAAGAACGTGAGTGCGCCTTCAGTCGCAGGACTCATAATCACAGCCTGTCTGGAGCTGGGCCAGCAGCGCGCCATCTCCTCTAGCATCTCCGACAGCTTGGTCATCTGTGGTCATCCAGATGTGACCGGCTTGCAGAGAAAGGTCAGGACGGAATGTCCTAGTGGTGTGGTCAATGAAGAAAACTTTAAAGAGATTTACTCGCAGTTCTTTCCTCAGGGAGATGCAACAACATATGCACACTTTCTCTTCAACGCGTTCGACACCGATCACAACGGCTCAGTGAGTTTCCAGGACTTTGTCATGGGCCTGTCCATCCTGCTCCGGGGGTCGGTGCACGAGAAGCTCAACTGGGCCTTCAACTTGTATGACATCAACAAAGATGGATACATCACCAAGGAGGAGATGCTCGACATTATGAAGGCTATTTACGACATGATGGGCAAATGCACGTACCCGGTCCTCCGAGAGGAGACACCACGGCAGCACAAAatggacaaaaataaagatGGCGTCGTCACCATCGATGAGTTCATTGACTGCTGTCAAAAGGATGAAAACATCATGAGATCGATGCAGCTGTTTGAAAACGTCATCTAG
>TU117233
atcagcgccgTGCTTGTTGGCGTGTGCGTGCACGCAGTTGGCTGCAAAATGGACAACAGGGAGAAGCGAAAATCAGACACAAGACCAACACCTGTACTAACTGAGAGGAGAGCATCGACAGCCTCGATAACAGCACGGATAGAGCAGAGAGCAGTGCTGGCACGGCTGTAGACAGCGTCGAAGATGAGCTGGAACTGGCCACCGTCCGCCATCGTCCCGAGGGGCTGGAGCAGCTGGAGGCACAGACCAAATTCACAAAGAAGGAGCTGCAGATTCTCTACCGGGGATTTAAGAACGAATGTCCTAGTGGTGTGGTCAATGAAGAAAACTTTAAAGAGATTTACTCGCAGTTCTTTCCTCAGGGAGATGCAACAACATATGCACACTTTCTCTTCAACGCGTTCGACACCGATCACAACGGCTCAGTGAGTTTCCAGGACTTTGTCATGGGCCTGTCCATCCTGCTCCGGGGGTCGGTGCACGAGAAGCTCAACTGGGCCTTCAACTTGTATGACATCAACAAAGATGGATACATCACCAAGGAGGAGATGCTCGACATTATGAAGGCTATTTACGACATGATGGGCAAATGCACGTACCCGGTCCTCCGAGAGGAGACACCACGGCAGCACGTGGAGATATTCTTCCAGAAAatggacaaaaataaagatGGCGTCGTCACCATCGATGAGTTCATTGACTGCTGTCAAAAGGATGAAAACATCATGAGATCGATGCAGCTGTTTGAAAACGTCATCTAGCACCCGAGGCGCCAGGAGTCCCGGCACAGAGGCGTCCCAGGACTCGTCTGCAGTCTCTTCGCAGGACTGACACTTCATACGTACTTCAAAAGAGCAGCAATATGCTGCgaaatatatatctctatatatattatgcaaataAGCTTCTTCAGCTGTAAGCTTTCATTtgtcctttaatttatttattcttcttcgTGCAGTGATGCATCGGCCCTTAATCCCAACTTTGACCCTTTTTTaggatttatttatgtctgtatttatttatttaaaagaattaTATACGATGACCTAGAAAGATATGTGCATAAATAAAGTCTGGCATAAAGTGGATGTGAGGACGGCATCGTCAGTGATTTGGGTCTCGATTTGATCAGCCGCAGCTCTGTGAGAGACCAGCTGCTCGTCTCCAGTGTTTTGGGCTTTGTGTCCCACACTTGTCCGTGTCTCGGCATTGACCCCCGAAACTGGAGCTTCGTACGACTCGAGGGAGATCTTCCATTTGATAAACAACTCcaactgtgaaaacaaaagcagtggCAGTGGATTCGTCATCGCCCAAAGCACCAGGCTCTCTCAAAATGACTTGTATAAACACCCCTGAAGACTGTATTGCGTATGTTGACACACGCGAGAGGACAAACAACCAACGCTTCAGTTTCCTCCTGTCCTCTGTGCTTCTAACAACGCCAGGGGAGCAATGCAGCAGTGACTTCGCTATAGAGTAGAAACTCACTGTAAGCACGAAAATAATTACAGCCTCAGCTCTTTCTCCCCCTCAGTAATTCACTCTGAAAGGCAACTATGCTGCCTCCCCATTACAATTCATTTAAACTGAGCCACCACAGACAGATAAGGCCATAATTGAAGatgaaacaaaaagcagatCCAGTTCAGCGAGATATTTTCCTTGAGATCAGaatcttgttttgttcaatCGGGGCCACAGGTCAAGGAAAGCGGCCCTGTTGAGATTCCGGTCGTGCGCCTGCACTGGTAACAGCTATTAATGTCTCCGTTTGGACAGAAATCGAACCGCGGCGATCCAGCAATTATACGGGAGCTGAAACTTGACGCTCTGTCATAACCACTCTGCAATTAGCAAGAAATTAACTGCGGCAATTAAACGGCAGCTGCATCGATGCATGAATGGAATTATTTCGGCCAGCTGAACTGTTTCGATAATGTTTACAGCCATGATGAAGTGATCTCTCTGGACACAGGAAAACTACATCCTGTCAGAAAAGCCTTCAGATCTCGCCCAAGACGGTGCGTTTCTGTCTGGAAAGCACTGGCAGGGATTCTGACATGAATTGGCTCCCAAGAACCAAACATCAAATGGCAAAAGCAGTCGAGGGCCCTTATCGATTCTGCACGACGCGCAGGCTGTGTTTTCGGTATGAGGGCCGTGCTGAACTCCGACTGGCCCCTCTACGTTTCCTACGAGGCTCGTTGAAAGAGAAGAAGTTCACCTGGGTCCTTCAGGTGCTCAGGTTTAATCTGCACAAAGGCGCTGTGGCCtgtggactggactggactcccGGTCCGCTGTGTAACATCTCACCACAGAGATCCTTAACTCACTCCCCCTCTCCTACAGTAAACTGGACTAAATGTGCAAGGTTTCCCAGTCTCGAGTCACTGAGGATTCGTCCGTTTTGATTAATTAGTTTCCTACAAAAGCCTGCCGGGCCATGATGGGCCGGACGTGGAGAGGGTTTCttttgagtgtttttgtgtggtttatAGCTCTCTGTACCGTCAGCAGATGCCAGATCGATCCCCTCTCACTGCTTTCCATGTCTACCCAAGGAAGAGAGAGCCCATCTACGCCAACCTACTGTTACTGCTGATACCAATGATAAgtcaaatatattgtttttctttttcaagccTCACATCCCAGAGAGCTGGTTGATCAAATTGAACTGTTAGTTTCATGTCAGATGCTGCCCGTTTGTGATGTCACAGAGTGCGCACCTTCAACAGCAGACGTCATCTATCATCCTTTAACAAACTTTTCAAGACCTACCCCAAGGTTATAATCTCTTTTCAACTTGTAATACTTTTCATATCGCACGCAGAGTGGAGAAGAGCTGATCTAAAGGCATTGTGTGTTGGAAACAGACTCTCAGATTTGACAAATGTCCCCCTCCCCCCGGCGCCACCTCCACTGTCACTCTCTCCCCCGGCTCGGCCTCCGGGCAGGCTCTCTCACCCCGGAGACGATGCGGTTTTGCTGCTTCTGCTGCATAATATTTTAACACAGATCCTGAGATCATTCGGAAGTACAGCACAGATCTAACGACCCGTGGGAAATGGTGGTTTATGCATGAGCTTGTTTATTTGGAATAAGGTTTACCGCCCCTGTCCCCTCTAAATCCATCCTAGCTCTGAATGAACAGGACCTCACGACCACAGTGCAGGGTTTAGTGAAACCACAAGGATTCAGACTCCCTCCCTCAAAGATGTGACCGAGAGCGGGTGTGTCTGTAATGTCTGAGAGGGTTCTACAAGCTTTGAAGTCTAAATTAGCATTTGTTtgccaattaaaacaacatgtttcCATATGTATTCGATATCTAATCTCGTGTCAACTtgggaaaacaatatatatatagttagttatttattttcctacagAGACCGCGGGGATTTACTTTGAGTGAGTATGCAAATGcactttcttattttgtgttttgaatttttCTCCGTTTACATGTCTGCACTGATTGGTTGGACTTGATGTTTGTGGGCTTTAATTGAGCTCTGAAAAGCACAGCACtgctttggtttgttcttgtttgtctTAAATTGGAAGATTTACTTGACTTTTAGAAACACAATGGAAGcagaatatgaaaatgaaaggtGACTGTTCTCCTTACGGATACAGACACTGGTGACATGATTGTGTGCAGGTTGACCCTGCGTggcttgtgttgtgtgtggctgCTGTTGGGTGACAGAGATGTTAGTGGAAGCATTATTTGTAGCAGCAgaaggagacacacacactgcttttcCGGATATCATTCTCGGTTGGCAGAAGCTACTTTTAATGGAGTAATTTCAGCTCCGTTTCCCTGTTCCACGGTTGTTCATATCTCGGCATCTCGTGTTGATGTTGAAAGCGCCCTGCCGTGCGATCGGAGTATTCCAGTCAGTCGAGCCGCTCCACACTCCGAGTTCACACCCGGACGGACCTGTGAGCAGCTCAGCTGAGGAAGCAGAGTAGGATCACAGTTTTGAATTGACGCAGACTCGGAatcccactgctgacaccaaTGTAAGCATCTGGGGGGTTCCGGCCACAGCGAGACTCGAACCCCCCAGTGACCTCACTGCAACACTGAAAGGCCCAGGCCCCTTATCGAGGCttcagaataataacaatatgaaaaagagaagaatTACCAGGGGAGTCAAAGTCTACAAAGATATTTCACTGTGATCGTGGAGTTAAACAAGCAATTAACATATTGTCCCAAGATCGTGTTAAACGAGCAATCAACAGCTGCGTTAACAGCATTACAGTTCATTAACGGACTCTGCTCGCTGGGCACCATTTTTCTACTATCATACACTGCAGGGAAATTCAGGGCTGTGGTAAAAGGTAGTCTGTTAGTTGTACTTCATATTTGATGTCTTAATGTTTTAGCGCCTCCCTATTCAATACTGTATTAAATGATTCGGTTAATACTACACACTAAGTGCTTCTCTCTATTGATCTTACggcatctttaaaaacaaaatattgacattttgaCTCTCGCCGCATCAATTTTCACCCAAAAACCACTGGGATGTCACCGGTAGAGCTCTTTAAATATCCTCTATAAAGTCCTTCCGTTTAATTTCATTGGCAGATACTGTGATGGAACGCAAGCTGTAAAATCGGCAGGTTTGCCTTAGATCTTTTGAACGGGTGGCACTAGAGCTGCCTGAGAGAAAAGACTCATTGCTACTTGAAAAAACTTGAAGATGAACAGAATCATGATGCTTAATTGAGCGGATTTAATGAAAAGGGTTCTGTCCTTATACTTCATGATTCCCGGGCAGGTGAATGTTTCAGTGAGCTCTAGGCCTTTGTTTAGTTTAACATGCACAGACTTATTCACATGTTCATGTTATTAGTGTATTGTGTTCCAGTCTCTTTGCCCATACTGTCACTTGTATAACTCCTTGTATTATAAAGATGAATCAACACAAACTCAGCACTTTGTTACTTGAATCCGCACAACAGcccaaattgaaataaaatgagtATAAATCTGAGGATAGCCACACCAAGAACCATCCGCGCGGGGTCTCCTGCGCTCCTGATGTTCATCGCGACTTCTCTCGGCCCCAGTGTGCGACAGGGATGTCGGTTTGAAGATCCGGCCTTCGTTTCGAGTGTTAGTTTGTATTGTGCAGATGTAGGAGATGAAAATAAGGATGCGGTTGCAGACAAATGAGTTCACCTGCTCTTGTTAATGCTGCGCTCGGAGGCTGAACCTTCATGTCGTTTGTTTCATGATTTCTTCATCCATCAACTCGAAATGAAATCTTTGTGACGCGAGCGTTTTGGTGTTAACGACACAGAATGCTtcttgtaaatatgtatgtagaCAAACAACACATCGCTCTGCAACCTGCCTCACCCCCCCTCACCTGCGGTTTGCCTTCAGAGACACCAGCCTATTCTTTTACTTCATTCAGCTTCTTCAAAAATGGAGGACAAATAAGTGACGCTGAAGGAGTCGGGCATTCGGGGCAAACATGCCAACTTTGTGTTAAAGTGTGTGAACATGAACAGATGAGGGACCCGACCGAATCGACACTGAGCTGACCGTGAATTGGACAATGACAAAACTGTCCCCCGATCACGTGTGTCGGTAGAACGTCGTCTCTAACACTGAGATGACCCACGCTGGGGcccaggtttgtagtttgcgaTTGGTGGGAAGGTCAGTTTTGATTCGGTCTCGGCcaagaactatatatatattcatagaaACATgcacatggagagagagagagacgagttGTCTGTAAGTGTTAAATCAGGTATCTATTCTGGTGTGTTGGTGGGACGGTGGAGGCACGGTGCGCGGCTCTGCTAGCACCAGTGTAGGATTTACAGAGTAGTACAGTACTTGTACATTTGAACTTTACAGTCCTGTCTTTGTGTAATTAggtgtgtacattttatataaaaactatTCAATAAAGAGCTCCG

Function

symbol description
kcnip4 Enables calcium ion binding activity. Predicted to be involved in protein localization to plasma membrane and regulation of potassium ion transmembrane transport. Located in cytoplasm and plasma membrane.

NR:

description
PREDICTED: Kv channel-interacting protein 4 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017898 False 1074 mRNA 0.52 10 27669198 27692155
TU117233 True 5985 lncRNA 0.46 8 27472881 27697379

Neighbor

gene id symbol gene type direction distance location
AMCG00017892 NA coding upstream 57718 27411360 ~ 27415163 (+)
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding upstream 112149 27351688 ~ 27360732 (+)
AMCG00017889 pitx2 coding upstream 194530 27269235 ~ 27278351 (+)
AMCG00017888 NA coding upstream 471087 27000562 ~ 27001794 (+)
AMCG00017881 NA coding upstream 505629 26939374 ~ 26967252 (+)
AMCG00017897 NA coding downstream 47534 27744913 ~ 27768328 (+)
AMCG00017901 NA coding downstream 76474 27773853 ~ 27787082 (+)
AMCG00017900 LOC107700316,LOC106919300,LOC106948245,LOC105915642 coding downstream 113843 27811222 ~ 27837126 (+)
AMCG00017904 NA coding downstream 210365 27907744 ~ 27909564 (+)
AMCG00017905 NA coding downstream 219047 27916426 ~ 27919140 (+)
G93938 NA non-coding upstream 187815 27284722 ~ 27285066 (+)
G93891 NA non-coding upstream 484846 26983969 ~ 26988035 (+)
G93878 NA non-coding upstream 556400 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 973711 26498712 ~ 26499170 (+)
G93736 NA non-coding upstream 1519141 25953504 ~ 25953740 (+)
G93986 NA non-coding downstream 1345 27698724 ~ 27700728 (+)
G94039 NA non-coding downstream 143674 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 400354 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 403354 28100733 ~ 28102094 (+)
G94069 NA non-coding downstream 745387 28442766 ~ 28444925 (+)
AMCG00017886 NA other upstream 475429 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 2420507 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 2757151 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 3360771 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 4143312 23301615 ~ 23329569 (+)
AMCG00017910 NA other downstream 934513 28631892 ~ 28646750 (+)
G94275 NA other downstream 1736033 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 3122490 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 4710050 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 4763919 32461298 ~ 32466636 (+)

Expression


Co-expression Network