AMCG00017900 (LOC107700316,LOC106919300,LOC106948245,LOC105915642)


Basic Information

Item Value
gene id AMCG00017900
gene name LOC107700316,LOC106919300,LOC106948245,LOC105915642
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27811222 ~ 27837126 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017900
CTCAGATCCAGCGTAGTCACATCCGATGTTCGCAGCTGCTGGGCTGGAGCTCCCCTACGGGTGACCCCCGGGACTCGCTCCCACCGATGACCAGCAACGGCCGTGATGCCGGTCAGCCACTCGCCGCACATCCCAGGCGTCTCCTGCCGTTTCTCGCCGAAGGCCGGGCCGTCGCTCGGGGCCTCTCCCTGTGTTGCTTGAAGGAGAATGATCATCGTCGAGCTGCGCACCACGGAAATACCACGGTGGCAGCGTAGTGCCCTCGGATCACCGCGGCTCCCCTCTCGgaggttttggttttggttttggcgTGGAGGCCGTCTCGCCAGGGATTCTTTCAGTCTTGTGGCGTCTCGGCCGGGCCACTCCCTCAGCGGGGGTGTAGCTTGGCCAGGATCGGACTCGGATGTTCAGGGCAGCTCAGGCGAGGAGACCGACCTCTACCAgagaaatacagtaaaaaaactGACGACGTaaaccaaaaaaggaaataaaaactacaTCCTAACCCCGTGTGTTGGGGACAAACTTTGCTTCACACACTCTTTACCGACGGACTCTTCTCACAAAGGGTAACTTGAATCCAATGGCATGGGTCAAGTTCTTCAGGAAGCCGGGGGGCAATCTTGGGAAATCCTACCAGCCGGGGAGCATGCTGTCTCTTGCCCCCACCAAGGGCCTGCTGAATGAACCCGGGCAGAACAGCTGCTTCCTCAACAGTGCTGTGCAGGTCCTCTGGcagctggacatcttccgacgCAGCTTGAGACAGCTTCCTGGACACGTGTGTCTTGGGGATGCCTGCATATTCTGTGCTTTAAAGAGTATCTTCACCCAGTTCCAGCACAGCCGCGAGCGAGCGCTGCCCTCGGACAACCTGCGCCATGCCCTGGCCGAGACATTCAAGGACGAGCAGCGGTTCCAGTTGGGCTTCATGGACGATGCGGCCGAGTGCTTCgaaAACATTCTCGAAAGGATCCATTTGCACATCGTGCCTGATATCGAGACGGACGTCTGCACCTCCAAGTCTTGCATAACCCACCAGAAGTTCGCAATGACTCTCTACGAGCAGTGTGTGTGTCGCAGCTGCGGTGCCTCCTCCGACCCCCTGCCTTTCACAGAGCTGGTGCACTACGTCTCCACCACCGCCCTCTGCCAGCAGGTGGAGCGCACCCTGGAGAAGAACGAGCGGCTGCGCTCGGACATGTTCGGCGAGCTGCTGCAGGCGGCCAGCACGGTCGGGGACCTGAGGAACTGCCCGAGCAACTGTGGCCAGAGGCTGAAGATCCGGCGCGTGCTCATGAACTGCCCCGAGATCGTCACCATCGGATTCGTCTGGGATGCCGAGCAGTCTGACCTGACCGAGGACGTGATCCGCTCGCTGGGGCCGCACCTCAACCTGTCCGGGCTCTTCTACCGGGTGACCGACGAGAACGCCAAGAAGAGCGACCTCATCCTGGTGGGGATGATCTGCTACACCAGCCGCCACTACTGTGCCTTCGCCTACCACACCAAATCCTCCAAATGGGTCTTCTTCGACGACGCCAACGTGAAAGAAATCGGGTCCAAATGGAAAGACGTGGTCTCCAAGTGCATTCGAGGCCACTTCCAGCCGCTCCTGCTCTTCTACGCGAACCCCGATGGGACGGCGGTCTCCAGCGAGGACTCGCCACGGCAGACCATCCCCTGTGCCCATTACAAGCCCCCGGTCAACGGAGAAGGCCCAGTGCATGACATCCCAGTGCCCGGGACGAAGAAGCTGGAACTGACTAAAGAGAACGTCAACGCGCTCCTGTCCAATCAGGGCAGCTTCAAGCAGAAACTGCAGCCGGCGCCCAGCTCGGCGTTCAGCCGAGGCAGCGCTCAGAGCAGCGCCGGCAGGGGGCCAGTGAAGGTGCCGGTCCAGGGCGACCCCAAGAGCCGCTTCAGAGAGATCTCGCACGAGTGCGCCCAGAGGGCCGGGGACGTGCGCTCACACCTGCACAAGAAGGAGCCGGACCGAGGGCCCAGACGGCCCGACCCTGGGGGGGCACACAGAGATCTCTTCCCGGACAAGACGTCCTCGCGCTCGGCGTCCCCCCCGGCGGAGAACGGGTTTCGGCAGCACCTGGAGCAGCGTCTGTACAGCAGCCAGGGCAAAGGGCCCTCCCGGACGACAGAGAGGGTCGCCAACCTGAGCCGCTCCGCCTCCCACGAGCCGCGGCCGCCGCCGAGCCGGGTGCAGGTTCTGCCAGGACTACCCAGTGGGCGCGGCCGGCCCCGGCACGAGCTCGCCAACGGCTACGACACGGACAGCAGCCAGGAGTCGCGGGAGAAGGGCGGCCGCAGCCGGAGCCGCCCCTGGAGGCCCATGCGGGAGACGCTGAACGTGGACAGCGTGTTCAGCGGCCCCGAGAAGCGCCCCCCCAGCCCCCGGCGGCGGCCCCCCGGCCAGGTGGAGCGGACCCTCTACGGGGGCGGCGAGCGGGAGCGCATGCCCTCCTGGCCGAAGGAGGAGCGCAAGCAGAAGAGCCTGATGACCATCTACGAGGACGAGCAGAAGGTGGACACGGGCAGCCGCAGCTCGCTGGAGTCCGAGGGCCGTGGGGACAAGGACAGGACCAAGGTGGGGGGCAACCTGAAGGTGCGCAATGACAACTGGAAGATGCAGCGGACGGAGTCGGGCTATGAGAGCAGCGACCGGCTGAGCAACGGCTCCGCCAACCTGGACTCGCCCGGGGTGGAGTCCCTCGCAGCGAAGGATCTGAGGCCCATCCCGGAAGTGCAGCCGTCCAGagagCCGCTCCCTCACAGCAGGTGTGATGAATCGAAGGCCGACAGCGCGCAGCCCACGTTCTCCTATGGAGACCAGCGGCCCAGGAGAGCTCCAGAAACCGAACTCCTCCCTCACGATGGCAGCCTTCTAAAATCTAGTCCAAGTTTACaaagGAGAAAGGCGTTCCGGTACAATCCTGGGAATTCGGAGCACAGCGTCTGGCTGGACGGAGACCCCGTGTTCCTGGAGGGGCAGCCAGAGGGGACCGGGGGCGTCTTCAGGGACGGGAGTCCGGCCCGGCAGTACCTGGAGAAGACCAGCAGCTCAGAGTGGAACAGCTCTGACGACCTGACCGGGCCGCTGTCGGAGCAGGAGGACTGCGCCTCCCGGTCCAGCAACAGCGACTCCGGGCCGGCCAAACCCGGGATCCCTGTCCCGGCGGTCTCCAGGTACCCCCCTGGAGAGAGCTACGCCGCCGCCGCCACTCAGCCCATCTACCAAAACCTGGTGCCGCCGCTGCCTCCcaagaaatacacacagagacagagcgCCTCCCCCCGAGCGCACCCGGACCCCCCACGCACTCCCGCCTACCCCCCGGCCAAAGCGCCCACCCCACCGCCACAGCCCGGCGGCCCGCACCACCCCCGCAAATGGGCCGAGGGCCTGACGGACCGCCGACGCTGCTCGGACGCCAGCTCCAAGTCCAGCTCCCCCGACCAGGAGAGGGCGACTCTTCCTCCCGATGACTTCGGCCGCCAGAGACCGGGCCCCGACCCCGGCGACGGCATCCTGCTCACCACCTACTTCTCGGTGGACAGCTGCATGACCGACACCTACCGGCTGAAGTACCACCACCGGCTCCCGCTGTACTTCGCTGAGCCCCGGGGGGGAGAGCAGACCTCTTCTGGGGAGAGCGAGCTGGGAGACACCAACCACCCGCCCACCACCGACCCCTACGGCTCATCGGACGGCTCCAGGACGAGGCCGGAAACGGGCTGTTCAACGGCTAAACCCACCGCGAAATGGAACCCGGTGACGCCCCGGGGGCTGGATGAGCACGGATACCTGTGAGGGAGGGGTCCCGGCGAACGTACCGATGACAAGAAAAACTGAAGGCGGAAGAGTCTGAAAACAGAGCCGACCCCCCGAAGAGGATGATTTAAAACTCGTGGATCAGATCGCCCGCCTCCGAATTCGGATAGAAAAGCCAGTGAACGACAATCTTGCTACACAATCTTGACCAGACTGTTACTCCTGATGGGACCTCCAGGCTCATTATTTGAAGACTCCCCTGTAGAGGGCAGTCTAGACCTAAATGAACACGGCCTGCTTCCCAGCGAgtcggagggagggagggagtgcgTGTGTGGATATGAGAGCAGCTAGGACCAAAAGACAGCAGTATACACCGAACGAGAATCTTACATTTGTACAAAACTGAGATGCGTTGTCATGTTTTCAGCCTGTGGGAAGCAGGATTTTCCATTCTTGAAACGAGGTGGAAATAGAAatctatagagagagagagagacgatcTGAAGCTCAGAGAATCACGGCTCCGCACAATCGAATGGCAGTATCCCCCCAGGGCGTTGAGTTCATTAGCTCTGAGGGGCAAAGCTTTAATCTCCGTTTTGACTCTTGCCCGGGTCGGTACAGTTCACTGCTCCCGTTCCGTTTGGGAGTTTATGCAAGAGGTACTGGAGTCCCTGCGGCGCCGGACCGAGAACACAAAGGCCGGTCGTGTTACTGTCGACCGAGTCCGGCTCGTTAACCTTAGTTTCACTGTTCCATTCCCTCGTGTTCCTCTGCCTTAAACCCCTCTCCTGGAGTCCGGTCCAGGAGGAAGCCGCTGTGATGCCGACCCGCCCGGACTGCGCACGTCCTGTGTTTGTAAACGCGTCGGTCTGGTGATCACAGTGTTCTGGACGCGGTTGTCCGGCGGGGGGTCTCACACGCCGATTATGAACGGCCTCTCCGGACCCACGCAGGGTTTATAATTGCCACTTTGATACCGCGTGTCCCACGCATGATGCACTTTTCCGACATGCTTTAGGGTCCGAGACGGTCGGAATCCCGGTTGTGTCCCGATGCTCGGCGCTGACCTCGTAATACGCATCTAGTACTTTTTCACTAGTGGTATTTTTGCTGCAgattcctttttttgttgtttttggatCGGAAAGATTTAATTTTCTACGCTGCCCACCAGCATTTCTTGCTGCCCCAGTGCCTTTCTATTTTTCTATGTAATAAGACTAAGATATGTGAATTGTATAATGTGTAAGTTTTCAgagatgttttatatacataacatatatatataacatttaactgcattttttatgacttagaattgtttaataaacttgtcattattttga

Function

NR:

description
PREDICTED: inactive ubiquitin carboxyl-terminal hydrolase 53-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017900 True 5142 mRNA 0.60 17 27811222 27837126

Neighbor

gene id symbol gene type direction distance location
AMCG00017901 NA coding upstream 24140 27773853 ~ 27787082 (+)
AMCG00017897 NA coding upstream 42894 27744913 ~ 27768328 (+)
AMCG00017892 NA coding upstream 396059 27411360 ~ 27415163 (+)
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding upstream 450490 27351688 ~ 27360732 (+)
AMCG00017889 pitx2 coding upstream 532871 27269235 ~ 27278351 (+)
AMCG00017904 NA coding downstream 70618 27907744 ~ 27909564 (+)
AMCG00017905 NA coding downstream 79300 27916426 ~ 27919140 (+)
AMCG00017914 NA coding downstream 836282 28673408 ~ 28692303 (+)
AMCG00017913 NA coding downstream 862917 28700043 ~ 28705029 (+)
AMCG00017915 NA coding downstream 884813 28721939 ~ 28735137 (+)
G93986 NA non-coding upstream 110494 27698724 ~ 27700728 (+)
G93938 NA non-coding upstream 526156 27284722 ~ 27285066 (+)
G93891 NA non-coding upstream 823187 26983969 ~ 26988035 (+)
G93878 NA non-coding upstream 894741 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 1312052 26498712 ~ 26499170 (+)
G94039 NA non-coding downstream 3927 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 260607 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 263607 28100733 ~ 28102094 (+)
G94069 NA non-coding downstream 605640 28442766 ~ 28444925 (+)
G94104 NA non-coding downstream 814022 28651148 ~ 28652294 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 113843 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 813770 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 2758848 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 3095492 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 3699112 24108560 ~ 24112110 (+)
AMCG00017910 NA other downstream 794766 28631892 ~ 28646750 (+)
G94275 NA other downstream 1596286 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 2982743 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 4570303 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 4624172 32461298 ~ 32466636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000043_02033302_02075904 NA coding CI01000043 null 2033302 ~ 2076148 (+)