AMCG00017901


Basic Information

Item Value
gene id AMCG00017901
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27773853 ~ 27787082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017901
ATGGCCCTTGGGGGGGCCAATGTTCCCGGGGCATCGCCGGAGAGCAGTCCCACCTCTGAAGACAGATATGGAGCTGCAGCCCAGCGCTCCCCATGTCCTGCCCTTGTGCCGGAGCAATCGTGCCAGGAACCCGAGACCGCCATGTCACACACCATGATGTCCACCAAGGAGAGGAAGATGCAGGCGGCTGCCATCTTGAGGGAAATGCATGGATCCAATGAGTCCGACCCCATGGACCTGGGCAAGAAGATCAGCATCCCCAAGGACATCATGCTGGAGGAGCTGTCCCTGCAGTCCAACCGGGGATCACGCCTCTTCAAGATGCGCCAGCGGAGGTCGGAGAAGTACACCTTTGAGAACTTCCAGAACGAGGCCAACGTGCAGATGAACAACTGTGTGTCTCTTCAGCCTCAGGACAGCGAAAcagcagagagaaacaaagcCGACGGGACCAGCCTGGAGGTGGAACAGTCACCGAAAACACCCCCAAACACGCCCGACCCCAAGAACCCCCCGAACCCCGACAGCATCGCCCCAGGCTACGGTGTCCCTCTGAAGGACATTCCTCCGGAGAGGTTCAACAGCACCGCCGTGCCCAGGTCGTACCACTCACCCTGGGAACAGGCCATCATCAACGACCCCGCCCTGATGGAGACCCTGCACGCCAAGATGCCCCTGCCAGAGCCCAGGACCGATGGGCCGGACTTCAAGAGCTTCAACAGGGTGGCCACCCCATTCGGGGGCTTCGAGAAAGCGTCCAGGGTCATCACCTTCAAGCTGCCCGAGAAGGACCTGAACCCCATCGGTGCCATGCCCCGATACCCTGAACTCCAAGACCCCGTGGCCAAGCGTCCCACCTTCAACAGGACGGCCCAGGGCTGGGTGTCGGATGGGAGCGCGCTGGTCATCCCCCTCGTGTCCCTGGAACCCGTCATCCCCGAGTCGGATGACCTTTGAACTGACACGACGCGCGTAACCGGGGCAAGGAGTAGGACGGCTCGTACACGCGGTGTCACAAGCTCGTGACGCGCGGCTCCCACGGCGAGATTCGAATTAACGCTCTAATTGAAACGTACGACGACAGACTGCTGACACAGGGGTAGAGGGTATcgcactttcatttttaaattctgcatcCAAAGGGTCCGACTGTGCTTACTGTGTACTGCTATTAAACTCCTGTAATTACTAATCTACACCATTAAATCATCATGCTAAAATGCTTTGTAAATATGTAAGTGCCTGTAAAACTGGCAGGGTGTGTGAAAGACGAAAACTGAAAAAACGACAGAGGATTTCAACTTGCTTTTTATACACAAGAAAAGGACAAGCAAATAGGatctctgtgtgttgtgtatttgcGGTTGCGAAGGACAGGTGTTTAAAGTGTTCGTCAGTAGAGTCGAGATACGACAAACTTGTACAGGTGTGTCTGTCGTGATTTCACTAAACACAACTGACCAGTACAGATAGACGCAACACTTTTACTGAACACAGATGGGTGACCGCCGAGCTGAGGAAGACACGGGTTGCATTCTGGGTAACTATTGCTAAACAACGAgaacaaaagagaaataaagtgaaaatttGAGTGTTTAAGCCAGTAGACTTCTATCGGAGACTGAATATGTGCACCATGACAGAGATCATGAATGACAAATATAGAGAGGGGAGTTTGATGAACGAGGTTTACCTTTTTATCTACTAGATGTGTCTTGTGAACGAATCCCTGGCAATAAATGGTTTCCTGTCACACCCATGAACAGAATCATGTGTATTTAAACCTCGGCTGACAGACTGATAAACCTCATTCTTCTATTGGTGCCTCTGAAACCAATTGAGTCAAATGACAGACGTGGTCTCCACCTCATGGCAAGCACAGTCAAAGACATCAGGTCAATATTGTGGCTCAGCAgcttacattgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagaacagacaTAAATATGTGGCATCACGGAGGGGTTACATCATCGCAACGAGCCCATGCACacaatgagccccattacacaAATACAGATACATCTTCAGCTTTAGATCATCTGAGGGAATTAATACATATCAGAAGAGACTGGTCTCACACAGACTGGCAAGACACAATGATAACAAATGACAGAGAGGACAACATGGAACCAAAGAAAATGGCAGCTTTAGATTCATTACATCTTAACATTTACAAGTAGCGCAGCCTCTCACCACACCCCCCACCGATCCACACAGCAGAGACACTGGTGTCAGGTGTGCCGGACTGGAGCCCAGGCTCCCAGTGACTCCCCCACACAGGTGTGCCCATGACATGAGCTCACAGTGGCAGTGTAGCTGGGTGTCTAGTGTTACACAATCAGAGGATTCCTGCAGCGGCACCAGATCGCATTGCCGGCTCTCTGGAAACACTGCCGGCTCGGGGACAGACCCACACTGCGGCCGACGTGGAAACAACGGCGGGCAGAGGCCGTTGGGAAACTGTGTTTGaaggctgttgttgttgttattatactGCATGGTGTGAAAATGCAGAACTCCTGCTCCTCCGACAGTGTTTGGGCTGCACAACTTCGTACAGAGAGTCTAACTGATACCAAGTAGGTCGCTTGAGGTTTTTAAGtcttttaaattgtttctttatatgCTTCAGCCAGAATTTATATGGAGTGTTTTAAGAATTATTTATTGAGGTTTATGTTATATATGGTTAATGTGTGGTTGTCCTTTTGAAGTGACTTTTTTGCTAGTGGTTAaataaaattgctttattgCACAATGGTGTTACTGCTTTGCCACTGAGGGACCCACCAATAACTTAAACTGAAAATTGGGAATTAATTGGGAACTAATTTAGGTGTAGTCATACAATGTTTATGTTCCCAAATACCCAGCGCCTCTACCCCCCCACTGTTACTTGGTAATGTGGTAAAATCTGGTACAAATTtggtaaaataatgatttaatactTGGCCAAAGCTCTGTGACTTAGTGTTGCTGATTAAACCACATTCATTGCTGTACAGCGTGACTCTCAAAAGGGCcaacaatgttattttctaaaacCACATTTCTGGATCAGTTAAGCACATATCTAGgtcttaaatgtattatatctgcCCTTAGCTCGTTGTCCTGtgatgtgtgcttattgtattgtgtactgattgtattacagCGTCTGGTAATTTTGTTACATGtgaattgtaagtcaccctgaataagggcatctgctaattaataaataagtgagtGAAAAAGAGACTGATaa

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017901 True 3281 mRNA 0.48 6 27773853 27787082

Neighbor

gene id symbol gene type direction distance location
AMCG00017897 NA coding upstream 5525 27744913 ~ 27768328 (+)
AMCG00017892 NA coding upstream 358690 27411360 ~ 27415163 (+)
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding upstream 413121 27351688 ~ 27360732 (+)
AMCG00017889 pitx2 coding upstream 495502 27269235 ~ 27278351 (+)
AMCG00017888 NA coding upstream 772059 27000562 ~ 27001794 (+)
AMCG00017900 LOC107700316,LOC106919300,LOC106948245,LOC105915642 coding downstream 24140 27811222 ~ 27837126 (+)
AMCG00017904 NA coding downstream 120662 27907744 ~ 27909564 (+)
AMCG00017905 NA coding downstream 129344 27916426 ~ 27919140 (+)
AMCG00017914 NA coding downstream 886326 28673408 ~ 28692303 (+)
AMCG00017913 NA coding downstream 912961 28700043 ~ 28705029 (+)
G93986 NA non-coding upstream 73125 27698724 ~ 27700728 (+)
G93938 NA non-coding upstream 488787 27284722 ~ 27285066 (+)
G93891 NA non-coding upstream 785818 26983969 ~ 26988035 (+)
G93878 NA non-coding upstream 857372 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 1274683 26498712 ~ 26499170 (+)
G94039 NA non-coding downstream 53971 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 310651 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 313651 28100733 ~ 28102094 (+)
G94069 NA non-coding downstream 655684 28442766 ~ 28444925 (+)
G94104 NA non-coding downstream 864066 28651148 ~ 28652294 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 76474 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 776401 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 2721479 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 3058123 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 3661743 24108560 ~ 24112110 (+)
AMCG00017910 NA other downstream 844810 28631892 ~ 28646750 (+)
G94275 NA other downstream 1646330 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 3032787 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 4620347 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 4674216 32461298 ~ 32466636 (+)

Expression


Co-expression Network