AMCG00017902


Basic Information

Item Value
gene id AMCG00017902
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27838251 ~ 27839790 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017902
ATGGCGTCTGAGAAGGAGCCGCCGAGAGGAGCGCTGCAGTCGCTGCCGAAACACTCGTACTGGTACGATTTCTGGCTCTTCATCCTGTTCGACATCGTGCTTTTCCTGGTGTCCCGTAAGGAGCCGACACGCTGCCCCGGCGCCTCCTGCGCTCCTCATGGCTTCTCCGAGACCCAAACAAGCAGATTCCCGACCAAACCAAAGCCCGACCCTGAGCTGAGCCCCTGGACGCGCCAGGTCTGGACTCCCCACTACAGCCTCGCCTTCTCTGATGATCACAGCCGGAGGAGCCCCAGGGGACTGGAGAAACGCCAAGCCACCTTCCTCATGATTGCTAACAGTTCAGTTAGACTTCCCTGAGAGACGTGTGATCCAGTGCCTGTGGCATTGAGGACCGAGCTGATGAGAGGGTTTATGGTTGAAGCGCAGTGTGCAGCGAGTTTTTAAGTGATTTAACGTGTGGGTGTGGAGTGAGAAGACTCCACAGTGGAAGAAGTGCATTCATCCCATAGTACATGTTCTTAAAATGCTCGGTTTATGTCCGGACTCGCTGACCGGCCCTTACCTTCGTCGCAGTTTATGGGGAATCGGTTTACAGTGTTGTTTGCCCTCCACTCCATGAAGCCCCGTCTCCTGGCCCACGCTGGCCACTGATGGATGTAACCCTCTTCTCTTCCGTGCTGCTTgtctattaaatatttactataagtgaa
>TU117305
CGAGAAAGCACGAAAGAGGGCGGGACCGTCCTATTGCGCGACACGTCATTGGTTCTCCTCCCAACCGACACTTCCCAGAAACCCGGAAGTCGGCACCCTGGGCTCAGCAATGGCGTCTGAGAAGGAGCCGCCGAGAGGAGCGCTGCAGTCGCTGCCGAAACACTCGTACTGGTACGATTTCTGGCTCTTCATCCTGTTCGACATCGTGCTTTTCCTGGTGGTGTATTTGTTAGTCCCGTAAGGAGCCGACACGCTGCCCCGGCGCCTCCTGCGCTCCTCATGGCTTCTCCGAGACCCAAACAAGCAGATTCCCGACCAAACCAAAGCCCGACCCTGAGCTGAGCCCCTGGACGCGCCAGGTCTGGACTCCCCACTACAGCCTCGCCTTCTCTGATGATCACAGCCGGAGGAGCCCCAGGGGACTGGAGAAACGCCAAGCCACCTTCCTCATGATTGCTAACAGTTCAGTTAGACTTCCCTGAGAGACGTGTGATCCAGTGCCTGTGGCATTGAGGACCGAGCTGATGAGAGGGTTTATGGTTGAAGCGCAGTGTGCAGCGAGTTTTTAAGTGATTTAACGTGTGGGTGTGGAGTGAGAAGACTCCACAGTGGAAGAAGTGCATTCATCCCATAGTACATGTTCTTAAAATGCTCGGTTTATGTCCGGACTCGCTGACCGGCCCTTACCTTCGTCGCAGTTTATGGGGAATCGGTTTACAGTGTTGTTTGCCCTCCACTCCATGAAGCCCCGTCTCCTGGCCCACGCTGGCCACTGATGGATGTAACCCTCTTCTCTTCCGTGCTGCTTgtctattaaatatttactataagtgaagtg
>TU117306
CGAGAAAGCACGAAAGAGGGCGGGACCGTCCTATTGCGCGACACGTCATTGGTTCTCCTCCCAACCGACACTTCCCAGAAACCCGGAAGTCGGCACCCTGGGCTCAGCAATGGCGTCTGAGAAGGAGCCGCCGAGAGGAGCGCTGCAGTCGCTGCCGAAACACTCGTACTGGTACGATTTCTGGCTCTTCATCCTGTTCGACATCGTGCTTTTCCTGGTGGTGTATTTGTTAGTCCCGTAAGGAGCCGACACGCTGCCCCGGCGCCTCCTGCGCTCCTCATGGCTTCTCCGAGACCCAAGTCTGGACTCCCCACTACAGCCTCGCCTTCTCTGATGATCACAGCCGGAGGAGCCCCAGGGGACTGGAGAAACGCCAAGCCACCTTCCTCATGATTGCTAACAGTTCAGTTAGACTTCCCTGAGAGACGTGTGATCCAGTGCCTGTGGCATTGAGGACCGAGCTGATGAGAGGGTTTATGGTTGAAGCGCAGTGTGCAGCGAGTTTTTAAGTGATTTAACGTGTGGGTGTGGAGTGAGAAGACTCCACAGTGGAAGAAGTGCATTCATCCCATAGTACATGTTCTTAAAATGCTCGGTTTATGTCCGGACTCGCTGACCGGCCCTTACCTTCGTCGCAGTTTATGGGGAATCGGTTTACAGTGTTGTTTGCCCTCCACTCCATGAAGCCCCGTCTCCTGGCCCACGCTGGCCACTGATGGATGTAACCCTCTTCTCTTCCGTGCTGCTTgtctattaaatatttactataagtgaagtg
>TU117307
CGAGAAAGCACGAAAGAGGGCGGGACCGTCCTATTGCGCGACACGTCATTGGTTCTCCTCCCAACCGACACTTCCCAGAAACCCGGAAGTCGGCACCCTGGGCTCAGCAATGGCGTCTGAGAAGGAGCCGCCGAGAGGAGCGCTGCAGTCGCTGCCGAAACACTCGTACTGGTACGATTTCTGGCTCTTCATCCTGTTCGACATCGTGCTTTTCCTGGTGGTGTATTTGTTAGTCCCGTAAGGAGCCGACACGCTGCCCCGGCGCCTCCTGCGCTCCTCATGGCTTCTCCGAGACCCAAGTGAGTTTTTAAAGTGACGCAGCTTTCATTCGCTTCTGTGCGTTTGAACAAGATGTCGTGATCGGATCTTTTCTTTTAGACAAGCAGATTCCCGACCAAACCAAAGCCCGACCCTGAGCTGAGCCCCTGGACGCGCCAGGTCTGGACTCCCCACTACAGCCTCGCCTTCTCTGATGATCACAGCCGGAGGAGCCCCAGGGGACTGGAGAAACGCCAAGCCACCTTCCTCATGATTGCTAACAGTTCAGTTAGACTTCCCTGAGAGACGTGTGATCCAGTGCCTGTGGCATTGAGGACCGAGCTGATGAGAGGGTTTATGGTTGAAGCGCAGTGTGCAGCGAGTTTTTAAGTGATTTAACGTGTGGGTGTGGAGTGAGAAGACTCCACAGTGGAAGAAGTGCATTCATCCCATAGTACATGTTCTTAAAATGCTCGGTTTATGTCCGGACTCGCTGACCGGCCCTTACCTTCGTCGCAGTTTATGGGGAATCGGTTTACAGTGTTGTTTGCCCTCCACTCCATGAAGCCCCGTCTCCTGGCCCACGCTGGCCACTGATGGATGTAACCCTCTTCTCTTCCGTGCTGCTTgtctattaaatatttactataagtgaagtg
>TU117308
CGAGAAAGCACGAAAGAGGGCGGGACCGTCCTATTGCGCGACACGTCATTGGTTCTCCTCCCAACCGACACTTCCCAGAAACCCGGAAGTCGGCACCCTGGGCTCAGCAATGGCGTCTGAGAAGGAGCCGCCGAGAGGAGCGCTGCAGTCGCTGCCGAAACACTCGTACTGGTCTGGACTCCCCACTACAGCCTCGCCTTCTCTGATGATCACAGCCGGAGGAGCCCCAGGGGACTGGAGAAACGCCAAGCCACCTTCCTCATGATTGCTAACAGTTCAGTTAGACTTCCCTGAGAGACGTGTGATCCAGTGCCTGTGGCATTGAGGACCGAGCTGATGAGAGGGTTTATGGTTGAAGCGCAGTGTGCAGCGAGTTTTTAAGTGATTTAACGTGTGGGTGTGGAGTGAGAAGACTCCACAGTGGAAGAAGTGCATTCATCCCATAGTACATGTTCTTAAAATGCTCGGTTTATGTCCGGACTCGCTGACCGGCCCTTACCTTCGTCGCAGTTTATGGGGAATCGGTTTACAGTGTTGTTTGCCCTCCACTCCATGAAGCCCCGTCTCCTGGCCCACGCTGGCCACTGATGGATGTAACCCTCTTCTCTTCCGTGCTGCTTgtctattaaatatttactataagtgaagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017902 False 713 mRNA 0.55 4 27838254 27839681
TU117305 False 838 lncRNA 0.55 3 27838251 27839790
TU117306 False 778 lncRNA 0.54 2 27838251 27839790
TU117307 True 917 lncRNA 0.54 2 27838251 27839790
TU117308 False 650 lncRNA 0.54 2 27838251 27839790

Neighbor

gene id symbol gene type direction distance location
AMCG00017899 NA coding downstream 114520 27698901 ~ 27723731 (-)
AMCG00017895 NA coding downstream 405675 27427479 ~ 27432576 (-)
AMCG00017893 NA coding downstream 412019 27415574 ~ 27426232 (-)
AMCG00017894 NA coding downstream 429694 27400504 ~ 27408557 (-)
AMCG00017896 NA coding downstream 442591 27368219 ~ 27395660 (-)
AMCG00017903 NA coding upstream 2422 27842212 ~ 27844771 (-)
AMCG00017907 NA coding upstream 594242 28434032 ~ 28443288 (-)
AMCG00017908 NA coding upstream 617906 28457696 ~ 28457938 (-)
AMCG00017909 cxxc4,LOC103148507,LOC106610359 coding upstream 729170 28568960 ~ 28569655 (-)
AMCG00017911 NA coding upstream 810151 28649941 ~ 28664695 (-)
G94012 NA non-coding downstream 54201 27779037 ~ 27784050 (-)
G94008 NA non-coding downstream 70920 27762686 ~ 27767331 (-)
G93843 NA non-coding downstream 1339074 26498914 ~ 26499177 (-)
G93816 NA non-coding downstream 1484527 26353517 ~ 26353724 (-)
G93802 NA non-coding downstream 1579884 26258096 ~ 26258367 (-)
G94060 NA non-coding upstream 253678 28093468 ~ 28097158 (-)
G94073 NA non-coding upstream 580126 28419916 ~ 28420262 (-)
G94074 NA non-coding upstream 585242 28425032 ~ 28425243 (-)
G94137 NA non-coding upstream 894034 28733824 ~ 28735744 (-)
G94218 NA non-coding upstream 1367680 29207470 ~ 29207804 (-)
G93796 NA other downstream 1728177 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 1730446 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 1822309 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 1880603 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 2820039 24997544 ~ 25018212 (-)
AMCG00017906 elavl2 other upstream 259115 28098905 ~ 28144589 (-)
G94172 NA other upstream 1034371 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 1429445 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 2745939 30585729 ~ 30596417 (-)
G94543 NA other upstream 2788198 30627988 ~ 30658493 (-)

Expression


Co-expression Network