AMCG00017904


Basic Information

Item Value
gene id AMCG00017904
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27907744 ~ 27909564 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017904
ATGGACGCCAGCAGCAGACCCCTCATGCAGGGCGCCGTGCCCGGACACCCGCAGTCCTCTCTCTCGGTCGGGGGGCTGCAGGTGTCTGCGTCCCTGCTGCGCCCCCCGGCCCTGTTCCTGCGCGCCTGCAGCCCGGCTCTGGAGAGAGGCTACCCTCGGACCCCGAAGTGCGCCCGCTGCCGCAACCACGGCGTGGTGTCCGCCCTGAAGGGCCACAAGCGCTTCTGCCGCTGGCGGGACTGTGTGTGCGCCAAGTGCGCCCTGATCGCCGAGCGCCAGCGGGTCATGGCGGCGCAGGTGGCCCTGAGGCGGCAGCAGGCGCAGGAGGAGAGCGAGGCCCGGGAGCTGCGGCTCCTGTACGCCGGGGCAGGGGCCTCCGACACCGGGCTCGGCATGGCGGCGTCAGGGGTGGTGCCCGGAGGGACCCCCAAACCGGGCTACGAGCTGTTCGGGCTGGAGGAGCACAGAGAGGGTGACAAGATGCCCAAATACAACTTGTACAACAGCTTCATGGGTCGTCCTTTATTCTCGGCTCCCGCTGGTCAGCTGTCGTGTCCAGTAGAGAAGACCTGCCCGACCCAGACACCCCGAGACAAGCCCCTCTCCGCCCGGGAGTCGCCGGACAAAGACACCGGCATTCAGTCGCCGGGCTCGGACCACCTCTCCGGACCGGTGGGCAGCCCGGGCTCGCTGTCCTCCTCGGACCTGGAGTCGGGGGGCGAGTGTGAGAGGCCGGGGGACTTCCCCTCGCCCGAGCGGACCCTGTCCGGCTCCACTCCCAGACCCCGGGACCCCACCGCCATCCTGGTGAAGATCTTCCCGCACCACAAGCGGGACACCCTGGAGTCGGTGGTGAAGACCTGCCAGGGCGACATTGTGAAGGCCATCGAGCTGGTGCTGAACTCCCGCTCCCAGGACAGCGGACTCCCCTCTCCCGAGCCTGCGGGGCCACAGAGAGTGTCCCCCGGTGTCGGACTGGGTCCCCTCAGCGCCAAGTCGGCTTTCTCCCCTCTGCAGAGCCCCCCAGGCGGCGCCCCCGGGGACAGTGTGTACGGTGTGAGCCCCCGGCTGGGCATCAGTCCGCTGCGGTTCGCCTATTCCACCTCCGGGGCAGGGCTGCCCGGCTTCATGTCTCCGTACGTGACTCCCGGGCTGATGCACGGCTTCCCCCTGCGCCCGCCCATGGACTACTCGTTCCCGGGCATGATCCGAGATTTCTCCTACCTCCAGAGCAAGGACCCCCTGTGCAACACGGGACTGTATTCGCGACTCAACCCCGAAAAACCGTGA

Function

GO: NA

KEGG:

id description
K19491 DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017904 True 1290 mRNA 0.69 2 27907744 27909564

Neighbor

gene id symbol gene type direction distance location
AMCG00017900 LOC107700316,LOC106919300,LOC106948245,LOC105915642 coding upstream 70618 27811222 ~ 27837126 (+)
AMCG00017901 NA coding upstream 120662 27773853 ~ 27787082 (+)
AMCG00017897 NA coding upstream 139416 27744913 ~ 27768328 (+)
AMCG00017892 NA coding upstream 492581 27411360 ~ 27415163 (+)
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding upstream 547012 27351688 ~ 27360732 (+)
AMCG00017905 NA coding downstream 6862 27916426 ~ 27919140 (+)
AMCG00017914 NA coding downstream 763844 28673408 ~ 28692303 (+)
AMCG00017913 NA coding downstream 790479 28700043 ~ 28705029 (+)
AMCG00017915 NA coding downstream 812375 28721939 ~ 28735137 (+)
AMCG00017912 NA coding downstream 858729 28768293 ~ 28787501 (+)
G94039 NA non-coding upstream 66483 27841053 ~ 27841261 (+)
G93986 NA non-coding upstream 207016 27698724 ~ 27700728 (+)
G93938 NA non-coding upstream 622678 27284722 ~ 27285066 (+)
G93891 NA non-coding upstream 919709 26983969 ~ 26988035 (+)
G93878 NA non-coding upstream 991263 26915913 ~ 26916481 (+)
G94055 elavl2 non-coding downstream 188169 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 191169 28100733 ~ 28102094 (+)
G94069 NA non-coding downstream 533202 28442766 ~ 28444925 (+)
G94104 NA non-coding downstream 741584 28651148 ~ 28652294 (+)
G94189 NA non-coding downstream 1130446 29040010 ~ 29041944 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 210365 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 910292 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 2855370 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 3192014 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 3795634 24108560 ~ 24112110 (+)
AMCG00017910 NA other downstream 722328 28631892 ~ 28646750 (+)
G94275 NA other downstream 1523848 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 2910305 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 4497865 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 4551734 32461298 ~ 32466636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1758132 dmrta1 non-coding NC_048585.1 CM023239.2 59283657 ~ 59284261 (+)