AMCG00017906 (elavl2)


Basic Information

Item Value
gene id AMCG00017906
gene name elavl2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28098905 ~ 28144589 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017906
ATGCGCACACCAGCCCCTCTGCGCTTCCCGGTCATCGCCGCCATGGAGGCCCAGCTCTCGAACGGACCCGCCTGTAACAGCACCTCCAACGGCCCCACCACGATCTCGAACAACTGCTCCTCGCCGGTCGAGTCGGGGAGCATAGAGGACAGTAAAACTAACTTGATAGTCAACTACCTGCCTCAGAACATGACCCAGGAGGAGCTCAAGAGCCTGTTCGGCAGCATTGGCGAGATCGAATCCTGTAAATTAGTGCGAGACAAAATCACAGGGCAGAGCCTAGGCTACGGCTTCGTGAACTACGTGGACCCTAAAGACGCCGAGAAAGCCATCAATACTTTAAACGGGCTGAGACTGCAGACCAAAACAATAAAGGTCTCCTACGCTCGGCCCAGCTCGGCCTCTATCCGAGACGCCAACCTGTATGTCAGCGGCCTGCCGAAGACCATGACGCAGAAGGAACTGGAGCAGCTCTTCTCACAGTACGGGCGCATCATCACTTCTCGCATCCTGGTGGACCAGGTGACGGGCGTCTCCAGGGGGGTCGGCTTCATCCGGTTCGACCGAAGAATCGAGGCCGAGGAAGCCATCAAGGGCCTGAATGGCCAGAAGCCGCCCGGTGCCACAGAACCCATCACGGTGAAGTTTGCAAACAACCCCAGCCAGAAGACCAGCCAGGCCCTGCTCTCCCAGCTGTACCAGTCCCCCAACAGGCGGTTGGACAATCTCCTCAACATGGCTTATGGAGTCAAGAGGTTCTCTCCGATGACCATCGACGGGGTGACCAGCCTGGCGGGCATCAACATCCCGGGCCACGCGGGGACCGGCTGGTGCATCTTCGTGTACAACCTGGCCCCGGACGCGGACGAGAGCATCCTGTGGCAGATGTTCGGGCCCTTCGGCGCCGTGACCAACGTCAAGGTCATCCGCGACTTCAACACCAACAAGTGCAAGGGCTTCGGGTTCGTGACCATGACAAACTATGACGAGGCGGCTATGGCCATCGCCAGCCTGAACGGATACAGACTTGGGGACAGAGTGCTGCAGGTGTCCTTCAAGACCAACAAGACGCACAAAGCCTAA
>TU117337
TTTAAAGTCAACCTCCTCATCACTTTGGCTCTCACTCAGTGATGCCGCTTATTTTTGGGGTGAACCTGTAAAGAGGGAGGCAGCAGCGGGctccttttttttaatcctttgattccttcttttgtttcttctgttcttttctttcttttccgtatatatatttttttattcttcctttaTTAGCGTGGCTCATCACCTTAATCTAtttgtgttcttgttcttgttttttttttaattttgtcatttgtttttttgttgttgttgttgttgttgttttttaaataaatatatatattttcccatttcatcttaattattgattgcttgattgcctggtcggtttatttatgtgtttgtggtGTCTATTCATTTTGTGTTGGCAAGGTTAATGACAGAGTTCAGGGGATTTATGTTGCAGAGCCTTGCTTAGCAGATCGCTGTAAAAGAGAGGGCAATATTGGGCTGTTTCCCTTCTGACACTAAGGACGTCTATAACTTTCGCTTATAGAGACGACGGCAACTCCAAACTAACATGGCAGTCAGACTGTGTGATGTGGCTTCTCTGCTCAGAAGTGGTTCGTGGGCAGCAGAGCCGTGGAATGGGCAGGTCATCGCCGCCATGGAGGCCCAGCTCTCGAACGGACCCGCCTGTAACAGCACCTCCAACGGCCCCACCACGATCTCGAACAACTGCTCCTCGCCGGTCGAGTCGGGGAGCATAGAGGACAGTAAAACTAACTTGATAGTCAACTACCTGCCTCAGAACATGACCCAGGAGGAGCTCAAGAGCCTGTTCGGCAGCATTGGCGAGATCGAATCCTGTAAATTAGTGCGAGACAAAATCACAGGGCAGAGCCTAGGCTACGGCTTCGTGAACTACGTGGACCCTAAAGACGCCGAGAAAGCCATCAATACTTTAAACGGGCTGAGACTGCAGACCAAAACAATAAAGGTCTCCTACGCTCGGCCCAGCTCGGCCTCTATCCGAGACGCCAACCTGTATGTCAGCGGCCTGCCGAAGACCATGACGCAGAAGGAACTGGAGCAGCTCTTCTCACAGTACGGGCGCATCATCACTTCTCGCATCCTGGTGGACCAGGTGACGGG

Function

symbol description
elavl2 Enables mRNA 3'-UTR binding activity. Predicted to be part of ribonucleoprotein complex. Is expressed in central nervous system; head; ovary; and primordial germ cell. Orthologous to human ELAVL2 (ELAV like RNA binding protein 2).

NR:

description
PREDICTED: ELAV-like protein 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017906 False 1083 mRNA 0.59 7 28098905 28120641
TU117337 True 1107 TUCP 0.47 5 28103299 28144589

Neighbor

gene id symbol gene type direction distance location
AMCG00017903 NA coding downstream 254134 27842212 ~ 27844771 (-)
AMCG00017899 NA coding downstream 375174 27698901 ~ 27723731 (-)
AMCG00017895 NA coding downstream 666329 27427479 ~ 27432576 (-)
AMCG00017893 NA coding downstream 672673 27415574 ~ 27426232 (-)
AMCG00017894 NA coding downstream 690348 27400504 ~ 27408557 (-)
AMCG00017907 NA coding upstream 289443 28434032 ~ 28443288 (-)
AMCG00017908 NA coding upstream 313107 28457696 ~ 28457938 (-)
AMCG00017909 cxxc4,LOC103148507,LOC106610359 coding upstream 424371 28568960 ~ 28569655 (-)
AMCG00017911 NA coding upstream 505352 28649941 ~ 28664695 (-)
AMCG00017916 NA coding upstream 549959 28694548 ~ 28698519 (-)
G94060 NA non-coding downstream 1747 28093468 ~ 28097158 (-)
G94012 NA non-coding downstream 314855 27779037 ~ 27784050 (-)
G94008 NA non-coding downstream 331574 27762686 ~ 27767331 (-)
G93843 NA non-coding downstream 1599728 26498914 ~ 26499177 (-)
G93816 NA non-coding downstream 1745181 26353517 ~ 26353724 (-)
G94073 NA non-coding upstream 275327 28419916 ~ 28420262 (-)
G94074 NA non-coding upstream 280443 28425032 ~ 28425243 (-)
G94137 NA non-coding upstream 589235 28733824 ~ 28735744 (-)
G94218 NA non-coding upstream 1062881 29207470 ~ 29207804 (-)
G94246 NA non-coding upstream 1141618 29286207 ~ 29286747 (-)
AMCG00017902 NA other downstream 259115 27838251 ~ 27839790 (-)
G93796 NA other downstream 1988831 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 1991100 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 2082963 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 2141257 25945141 ~ 25957648 (-)
G94172 NA other upstream 729572 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 1124646 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 2441140 30585729 ~ 30596417 (-)
G94543 NA other upstream 2483399 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 4115118 32259707 ~ 32263865 (-)

Expression


Co-expression Network