AMCG00017909 (cxxc4,LOC103148507,LOC106610359)


Basic Information

Item Value
gene id AMCG00017909
gene name cxxc4,LOC103148507,LOC106610359
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28568960 ~ 28569655 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017909
ATGAACAAGCTGAAATGCGGCGCTGCTGAAGCAGAGATAATGAATCTCCCAGAACGCGTTGGAACTTTTTCCGCTATTCCGGCTTTAGGGGGCATCTCATTACCTCCCGGGGTCATCGTCATGACAGCCCTTCACTCCCCCGCAGCCTCAGCAGCCGTTACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCACAGAATAATTCCTCGGCATCCAGTGGAAACcctgcaaagaagaaaaggaaaaggtgtGGGGTCTGTGCTCCCTGCAGGAGGCTAATCAACTGCGGGGTTTGCAGCAGTTGTCGGAATCGCAAAACCGGCCACCAGATCTGCAAATTTAGGAAATGCGAGGAGCTGAAGAAGAAGCCGGGCACGTCGCTGGAGGCTGGGCTGGAACACATCCGAACAACCCCAGGCTTGGCTCGGCTCCAAGCTGAGCTGGGAAATGGTTTTCAGCAGTGA

Function

symbol description
cxxc4 Predicted to enable methyl-CpG binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human CXXC4 (CXXC finger protein 4).

NR:

description
PREDICTED: CXXC-type zinc finger protein 4-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03344 IDAX; Dvl-binding protein IDAX

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017909 True 471 mRNA 0.54 2 28568960 28569655

Neighbor

gene id symbol gene type direction distance location
AMCG00017908 NA coding downstream 111022 28457696 ~ 28457938 (-)
AMCG00017907 NA coding downstream 125672 28434032 ~ 28443288 (-)
AMCG00017903 NA coding downstream 724189 27842212 ~ 27844771 (-)
AMCG00017899 NA coding downstream 845229 27698901 ~ 27723731 (-)
AMCG00017895 NA coding downstream 1136384 27427479 ~ 27432576 (-)
AMCG00017911 NA coding upstream 80286 28649941 ~ 28664695 (-)
AMCG00017916 NA coding upstream 124893 28694548 ~ 28698519 (-)
AMCG00017917 tbck,LOC102796740 coding upstream 245326 28814981 ~ 28841636 (-)
AMCG00017918 NA coding upstream 276723 28846378 ~ 28852152 (-)
AMCG00017924 aimp1,LOC107684278,LOC107675933,LOC107729369 coding upstream 462224 29031879 ~ 29049397 (-)
G94074 NA non-coding downstream 143717 28425032 ~ 28425243 (-)
G94073 NA non-coding downstream 148698 28419916 ~ 28420262 (-)
G94060 NA non-coding downstream 471802 28093468 ~ 28097158 (-)
G94012 NA non-coding downstream 784910 27779037 ~ 27784050 (-)
G94008 NA non-coding downstream 801629 27762686 ~ 27767331 (-)
G94137 NA non-coding upstream 164169 28733824 ~ 28735744 (-)
G94218 NA non-coding upstream 637815 29207470 ~ 29207804 (-)
G94246 NA non-coding upstream 716552 29286207 ~ 29286747 (-)
G94337 NA non-coding upstream 1342327 29911982 ~ 29914837 (-)
G94358 NA non-coding upstream 1426594 29996249 ~ 29997513 (-)
AMCG00017906 elavl2 other downstream 424371 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 729170 27838251 ~ 27839790 (-)
G93796 NA other downstream 2458886 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 2461155 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 2553018 26012488 ~ 26015942 (-)
G94172 NA other upstream 304506 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 699580 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 2016074 30585729 ~ 30596417 (-)
G94543 NA other upstream 2058333 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 3690052 32259707 ~ 32263865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001258 cxxc4 coding NC_007112.7 CM002885.2 26250729 ~ 26294995 (-)
grasscarp (Ctenopharyngodon idella) CI01000300_10846414_10847534 CXXC4.S, CXXC4 coding CI01000300 null 10845683 ~ 10848670 (-)