AMCG00017912


Basic Information

Item Value
gene id AMCG00017912
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28768293 ~ 28787501 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017912
AGATCTGAACGAGTGTGGATTGAAGCCGCGGCCATGTAAACACAGGTGtatgaacacctatgggagctACAAATGCTACTGCCTGAACGGATACATGCTGATGCCCGATGGCACGTGTGGAAGGCTGCAGCTCGGACCGGACGGTAGGACCTGCGTGGATGTGGACGAGTGTTCCACCGGCCGGGCCGTGTGCCCGAGGTTCAGGAAGTGCATCAACACCTTCGGGAGCTACATCTGCAAATGCCACGAGGGCTTCGACCTGCAGTACATCAATGGGAAATACGAGTGCATCGACATAAACGAGTGCACGACCTCCCAGCACCACTGCAGCCGCTCCGCCACCTGCTACAACACGCCAGGCTCCTACAAGTGCAAGTGCAAGGAGGGCTTCCGAGGAATGGGCTACGACTGCAAGCCCATTCCCAAAGTTATCATCGAACCTCCTCCTCCGGGTCCCATCCCTCCAGGGGGCAATAAGATTCCAGATACCGATCACAAGAGAACGACCACTACACGCCGGCCCCTCGTGACACCCCGGAGAAACCCCCcgaccaccaccaccaccaaagccACCACCAAAGCCACCACCAAAGCCACCACCACGACTAAGgccgccaccaccaccaccaccatcccgtctacaaccaccaccaccaccaccaccaccgccgCCCTTCCCCAGAGGGTCACCCCAGCCCCGGTGGTGCCCACCCCGAGGGAGGTTACTGTGGTACCCGAGGTTCCCCGGAAGGAGAACAGTATCTTGGAGGGCATCAATATCGAATTGGGTTTAACGGCCGAGGACGACGCCAAGGACGACTCAGATGCCACTCTCCAGAGCTGCAACTTTGACAGCGGTCTGTGTGGCTGGATCAGGGACCGAGAAGGGGACTTGCACTGGGAAACGGCCGCAGATTCCTCAGGCGGGAAGTACCTGACCATCCCCGAGGTGGAGGACAAGCACGGGAGCCGGGCAGCGAGGCTCATCCTGCCCCTGCATGAGCCCTGGAACACGGGCAGCCTGTGCCTCTCCTTCAGACACAAGCTCTCTGGGCACCACGTGGGCGTCCTGCAGGTCTACGTGAAGAAGGGCGGCCAGCACAGCCCGGCGGTGTGGGGCCGGACCGGCGGCCACGGCtggagggaaacccagatcacGCTGTGGGCGTCTGGACTGGACAGTGTGATCCTGAAAGGAGAACGCGGGCATGGCCGGGGGGGAGAGATCGCCCTGGATGACGTCAGCCTCCAGAGGGGGTCCTGCACCGAGGATCACAATCTGAGGAGACTTTAACGCACCTCCAGGGACAGAACAACGAAACAGAAATACTGGAAAGGACTCCGATCGACAGCTTCTCCCTCCTTTCCCGGGAGGCCGGGTTTCAGGGCAGGACGCAGCCTTACACGAGCACTTTGGGAAACGCGTGCCGCTCGAAACGAGACTTCGCcggaaaacacaaacaaacatacaaacaaacaaacaaacaaacgacgACGACAGACACTTTGAAAAGACGCGCGGGATCCTCCATCGACTCCATCCGTGCTCTCGCGCCGCGTGTGTGTGATCTGTGCATGCCCGACCGACGCAGAGGAATGCGACCCCGAAATGTCACTGCAAAGCAAATCCATCTCCAGCTTAAGAAGCCGACCTACAAGTGAGCTTGTTTTACACAGTCATGCCCtggacatatttaaaaagcttaGCCTCCCTGCTCTGCCCAACGCAGGCGCACACCCGGAGACCGGCTTCAGTGTGTATTTGAAGTGGTACAGAAATACGGTTTATCTGTGCTGACACACAGCTTAATAAAAGTTGTTCAGAACGCCTTCGAGAAACGCTGGTCTGAATATGAAGTGTCTACAACAATTACACATCTCAAAGGGCAGCTTATAGACTCCGCTAATATTTCTCTGACATATGTTTCACAGAAGACAGAATAGTAACCCAAACCCAATCACTTTTCATCCGACGATAATCATCAGAGGCAACAGTTTCCCAGATGCCAGATGTGCACCGACTATTATTTGTGCAGAAACGGGAGCAAGTGCCGTGGGGGGGTTTGTAGGAGAATAGCAGGATGTTTTCCGTGAGcgcagaaagaaagaagaaaatagtTTTGCCCCGTCTTTTTCGTCATCCGCTCAGACGAGCCCAAACACATGCTTTGTTTGGATGTGGGGTGACATCATTTAGAAGAAAAGTATCTGCAGCTCAGACACAGTTTTGGAGGCATGTGGCAGGTTCAGGGGAGGAACAATGTGAGGCATTTATGGAggaatcatatttttatatctttACAGGTTGCCAGTatatatactaaatacaaaCTCTGTATGGCTCCAGTCACGTTTAGgttaaaataaagcatgacaataagacatttaatataatacttGCCCTAGACTATAAAGAAACAAGTGAATAATCCACAAGATTGTGATTTATTCTGAAGATAATTTGACACAGTGGATATTTGCGCTGGCAGTATGATTTTGTGTCTGAGAAAAACtggattttatttcatacagtatAAGAGAACAGTGTATTGGGAGccatttacttaaaataataggACGTTTTTTCTCACACGAATTAAAAATAGtcacatatgtattttatttacgtAACATCACCAAAaggtttgtgtttaattgagcTCAGACAGGACTAGGCCTTCAAAATAAATGGAGGTTTATTTGCTTCATATTTTTTGGTATCTGTAGTAATTCATCTGAGAATCAATCAGCCGTTCAGTAATGAATCATAATTTCTCACGACAAAGATGCTTTTGTGACATGCTAAATCAtttgtatagtttgtttgttgtttttaacatacATGTCCGTTTGATCATATTATTTGGAAATAGTTGTGGTCAGCTCAGAGAAGTTTATTTCAGTATCGTTTCAACGCTCACTAAGATCACTAACCTGGTCTGACATCATTAAGCCGGTCACTCAGTATTACAGCTTCCCTTCCACCTAGATAGCATTGTTTCATTTGTGTAATTTTACTATGAACGTGTGGTTCAGACAGTGAAAAAACTGTACAGTATCAATACTGccattttgaacaaaacaaaacattgacttattttgtgttattttggtgCTGTATATGACAAATgtcttgaattattttcttgttagacatatgtattattgtaaatatatacatgtacaaatctctatatacatatatatatatatacagagcccTGCAATAGTGGGATCGCCGAGTGTTCCCACCTTCCCTGCCCGTGCTTTTAAATACCCGCTAAATGCACGAGCATCCGCGTCCAACTCTGCAAGACGCACAGTGCGGAGCCGCCAGGTgctgtggtgtttgtgtctgctctgttttgtgcttggtgttgtgctAGTTCAGTGTGACGGCGGCTCGTTTCGATACAGCAGgtctctgtatgtgtatataaaacgCATTCTACTTACGTCTGTAAAAGattgatttaaacaattaaaaagtgtatatattctaaaatatttCCATGCCAAAATTCCCTATGTGGCAGCTTCACGAAACCAGAGTTGACtgggaaaacaatgcatttctaATTGTAATTGATCTCTTTCCTGTAATTTAACATCAATGTTGTGGATAACCTGTCAACTACAAACTTATGAAATGTAACACCAGTATTCTATGGTTTCTGTGCTCAATATGATGGGTTTTATAATTGATGAGATCTTAATTTCCTGTGGTGTGCGCTGTTGTATTTAGCTCAAATTGATTGGGTCACAGCTGCAGATAAAACGGACACACCGGCCCAGCTATGCTCAGTTTGTACTCCAGTGCTCATTTTTACCCAGTGGTAttatcaataaaaatgtaaataaactctTGAGTGGGTCAATGCCACCCGATCGCTTGCGTTCAAAGGAGATGCGACAGGTTGCTGTTGTCAACATTATCAATGATACGTTGTGTTTTCAAATTGTGATTTAAACTTCTATATTTACTCCATGAagttcctttctttttaaagccTGTGTCAATTACTGAGTATCTACACCCACTCCCCGGTCCTGGCCTTTCATAACAAAACGATTGACAGGTTGTGTGTTCGGCGCAGGAAGCGCAGAGCAAAACGACTGcttaaaaacattgctttttgtGCATGTCTATGAAGTTAATAATTGTTCAATAGTGCGTCTCTGCAGTGGAGCCATTCCCTTGTCTTGCCTCATCTTTAGCTCAttatagaagaagaaaaatctgccATTAAACACAGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017912 True 4259 mRNA 0.47 10 28768293 28787501

Neighbor

gene id symbol gene type direction distance location
AMCG00017915 NA coding upstream 33156 28721939 ~ 28735137 (+)
AMCG00017913 NA coding upstream 63264 28700043 ~ 28705029 (+)
AMCG00017914 NA coding upstream 75990 28673408 ~ 28692303 (+)
AMCG00017905 NA coding upstream 849153 27916426 ~ 27919140 (+)
AMCG00017904 NA coding upstream 858729 27907744 ~ 27909564 (+)
AMCG00017920 papss1 coding downstream 82373 28869874 ~ 28897965 (+)
AMCG00017919 NA coding downstream 167979 28955480 ~ 28966878 (+)
AMCG00017922 NA coding downstream 238514 29026015 ~ 29029373 (+)
AMCG00017923 NA coding downstream 263653 29051154 ~ 29055527 (+)
AMCG00017921 hadh,LOC107594428 coding downstream 269115 29056616 ~ 29060724 (+)
G94104 NA non-coding upstream 115999 28651148 ~ 28652294 (+)
G94069 NA non-coding upstream 323368 28442766 ~ 28444925 (+)
G94057 elavl2 non-coding upstream 666199 28100733 ~ 28102094 (+)
G94055 elavl2 non-coding upstream 669079 28097733 ~ 28099214 (+)
G94039 NA non-coding upstream 927032 27841053 ~ 27841261 (+)
G94189 NA non-coding downstream 252509 29040010 ~ 29041944 (+)
G94236 NA non-coding downstream 486246 29273747 ~ 29274011 (+)
G94245 NA non-coding downstream 498692 29286193 ~ 29286745 (+)
G94255 NA non-coding downstream 519599 29307100 ~ 29310853 (+)
G94260 NA non-coding downstream 535071 29322572 ~ 29323345 (+)
AMCG00017910 NA other upstream 121543 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 1070914 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 1770841 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 3715919 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 4052563 24705270 ~ 24715730 (+)
G94275 NA other downstream 645911 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 2032368 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 3619928 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 3673797 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 3720189 32507690 ~ 32601449 (+)

Expression


Co-expression Network