AMCG00017914


Basic Information

Item Value
gene id AMCG00017914
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28673408 ~ 28692303 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017914
ctctctctctctctctctctctctctctctctctctctctctctgtggtggATACAGGTCTCTCAGGTGACAGGTAAATGACTCCGAATGGGTGGAGCCACCTTTGCAAAGCTGGCAGCTACCAGCCCTACAACAGTCCACCTGTTTCACCTCACAGGCAACCTGGCTCCTTAGCTTTGGATCTCCAGGAAGGGCAGGGCTGGGGGGAGACGGTCCAAGGGTCGGTATGGATCACGCCAAGGAAGCCGGGGCGAAGGACAATGTGTTCAAAAGGCGGCCCCGGCTCTTGCTGAGGCCCAAGCTGTATCTGGAGAGGAGGAAAACGGACTCGATCGTGGCCGATGACAACTGCAAAGGAGACATAAACATCGGCACCCTGGTCAGGAGGAGCCAGTCGGACAGGACAGAGTACAGCACCAAACTCAAAGAGAAGATGGCTCCCTTGGATCTATCCGCCCCAGCTTCCCCAGCCTCTCCGGCCCTCAGCCCGCAGGAGACCCGGCTGAGGAAGATGCTCCGGAGGTCCAAAGTAATCCAGGAGCTGGTCCAGACGGAACGAGACTATCTCACTGATTTGGAGCTGTGTATCAGAGAGGTGGTTCAGCCGTTGAGAGAATTACAGGTGGTGGACGTGGACCGGCTGTTCACCAACATCGACTCTGTATGCAACGTGTCCGCAGAGCTGCTGTTCAAGCTGAAGATGGCCACGGCCGAGCCCGACCCAGAACTGCAGAAAATAGGTGACATCTTCATACAGAACAAAGCCGAGCTAGAGGAGGTCTACAAGATCTACTGCTACCATCACGACGACGCCAACAGTTTACTCAAAACCTACGAGAAAGACGAGGAAATCAGACAGAGGTTCAGGGCCTGCGTAGCGTCCCTGAAAGGAAAGCCGAACCTGTTAGACATGGGCTCCCTGCTCATCAAGCCCGTGCAGCGAGTGATGAAGTACCCGCTGCTGCTGGGCGAGCTGTGGAACGCCACCCCGGACGAACACCCCGACCGGCGGCCCCTGGAGGAGGCCCTGACCACCGTGAAGatcatcaacatcaacatcaatgAGTTTAGACGGAGGAAAGACATCGTGATGAAGTACAAGAAGCCTGACGAGGAGGCGACGCTGATGGAGAAGCTAAACAGGTTTACTATCCACTCCATCAAGAAAAAGTCAACCAGGGCCATCATGAAAATGTTCCCCGGAGTCGAGTCGCAGGTGAAGGATGAGATCTTCGACAGAGAAGAAAAGGTCTTCCGCAATCTCGACAAGGCCGTTCGACAGCTAGTAAAGAACGTCTGCTGTTACCTCCATCACACACAGGAAATTATCTCAGTGGCCGTCCAAAATGTCCAGGACCTTGAGAATATTCTACAGGATCCAGACGAACTTGATACCAACGGTTCAAAGTACAGGAAGAACGACGACAACccatatttgcattttAAAGACAAACTGGAGCGGTTGGTGCTGACCCCGCTGTCGGTGCTACAGGCCATGTTCGTGGCGCCGCAGAAGCTCATCCAGAAACGCTACGACAAGCTGCTGGACTGCTGCAGCCGCACAGAGCGCCCTTCCAGCGAGGAGCCAGGCTTCGCGCGCCGCGACTTCGAGGCCCTGAACGCCCAGATGGTGGAGGAGCTGCAGAGGTTCAACACCGCGGCCCGGACCATCCTGAACAACTGCGTGTGCTGCCTGGCCGCCCTGCTGCGGGACCTCATGCGCTCAGCACAGCAGAAGTCGCCGCCGATACAGCAGCTGCCCgCTCCTTTATCGAACATCAGTGAAGTCCAGACCAGTGTGATGGAGCAGCTGAACAACCTGCTCTTCGTGAAGGAAAATGCTCAGAAGTTAATGGAGCGCAAAGTGAGCTTCGAGAAACCCAGGAAAGTGCTGCCCGAGATCCCCCGCCAATCCGAAGCTCAGCGCACCCGGCTGCTCACCAGCTACCCGGTGGAGCAGCTGTACCAGCTGAAACGCAACTGCAACGCCACGCAGGAGCACGATGTCAGCCTGTTTGAGGGGGAGCTGGTGGCCGTGGTGGAGCAGACGGACCCCCTGGGCAGCACCAGCAGATGGCTGGTCGACACGGGCGGCCCCCAGGGATACGTCTACTCCTCGTTCCTGAAGCCGTACAACCCGACGCGCGACCTCAACGGCAGCATCCCAGAGCAGCACGACGACTTCGACAACATCAGCCTTTTCGTGTCGGGCAGCGCGGGCGGCAGCCTGAGGAGATACAGGGGCGACAGAGGCGACAGGGGCGACAGAGGCTCAACCGTGAGTGAGCAGCCCGACACGGAGGCCCTGGAGGGGACAGGCAGCGATGACCAGCAGttcTACGCCGTCTACGCATTTCAAGCGCGCTGCGAACAGGAGCTGAGTCTGCAGGAGTACCAGCACGTGCGCATCCTCAAGTTCTGTGACCTGAGCGGGAACAAGGAGTGGTGGCTGGCGGAGAGCGACGGACACAAAGGCTACGTCCCGGCCAACTACCTCGGAAGGATGTCCTACGCGTGACGGGGGTCCGAAGGCCACGCTAACCTCCGCGTCTGAGCTTCTCCGGTTTCTGTCTGTTCTGTATCCCCGtgcaattaatttttaattcccTGTTTTAATGAAGTACAGTCTTGCACTATTGATTATGAGGCCGAGCACTTAGTATTGCCAACtacagtgtttttcattttctttcactcACATACTGTTAACCTCCCTGTCTGTTAATTGAAGTGTATCAGATCTAACGTGTttgtacagaaatatattttaacacgTGTtccaagagaaataaaaatatatatatatatatatatatatctattgaAAGATGTCAATCTGTAGTGTCTTTC

Function

GO: NA

KEGG:

id description
K20711 ARHGEF38; Rho guanine nucleotide exchange factor 38

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017914 True 2850 mRNA 0.55 13 28673408 28692303

Neighbor

gene id symbol gene type direction distance location
AMCG00017905 NA coding upstream 754268 27916426 ~ 27919140 (+)
AMCG00017904 NA coding upstream 763844 27907744 ~ 27909564 (+)
AMCG00017900 LOC107700316,LOC106919300,LOC106948245,LOC105915642 coding upstream 836282 27811222 ~ 27837126 (+)
AMCG00017901 NA coding upstream 886326 27773853 ~ 27787082 (+)
AMCG00017897 NA coding upstream 905080 27744913 ~ 27768328 (+)
AMCG00017913 NA coding downstream 7740 28700043 ~ 28705029 (+)
AMCG00017915 NA coding downstream 29636 28721939 ~ 28735137 (+)
AMCG00017912 NA coding downstream 75990 28768293 ~ 28787501 (+)
AMCG00017920 papss1 coding downstream 177571 28869874 ~ 28897965 (+)
AMCG00017919 NA coding downstream 263177 28955480 ~ 28966878 (+)
G94104 NA non-coding upstream 21114 28651148 ~ 28652294 (+)
G94069 NA non-coding upstream 228483 28442766 ~ 28444925 (+)
G94057 elavl2 non-coding upstream 571314 28100733 ~ 28102094 (+)
G94055 elavl2 non-coding upstream 574194 28097733 ~ 28099214 (+)
G94039 NA non-coding upstream 832147 27841053 ~ 27841261 (+)
G94189 NA non-coding downstream 347707 29040010 ~ 29041944 (+)
G94236 NA non-coding downstream 581444 29273747 ~ 29274011 (+)
G94245 NA non-coding downstream 593890 29286193 ~ 29286745 (+)
G94255 NA non-coding downstream 614797 29307100 ~ 29310853 (+)
G94260 NA non-coding downstream 630269 29322572 ~ 29323345 (+)
AMCG00017910 NA other upstream 26658 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 976029 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 1675956 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 3621034 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 3957678 24705270 ~ 24715730 (+)
G94275 NA other downstream 741109 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 2127566 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 3715126 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 3768995 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 3815387 32507690 ~ 32601449 (+)

Expression


Co-expression Network