AMCG00017919


Basic Information

Item Value
gene id AMCG00017919
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 28955480 ~ 28966878 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017919
ATGTTCTGGGGGAGCCATACCACTGCCTCTGTCCTGTCAGACCAAGCCAAGGAGCAGGTTTACCCGTGCAGCAATGACAAAGAGTGCACCGTGGGGAGCTACTGCCACACCCCCCACCACGCGCCCTCCCGATGCCTGGCCTGCCGGAGGAAGAAGAAACGATGCCACAGAGATAACATGTGCTGCCCTGGGAACCGCTGCAGCAACTACATCTGCGTGCCTCTCGCCGACACTGTCCTGGCGCCGCACATCCCTGCGATAGAAGGACCCAGCAAGATCGGTCCGTTCTCCTCTAAGGACAAAGGCTGGCCCAAAGGTGGAAAGGCACAGTCCAAGCTACCACAAGTCAAAGGCCACGAGGGCGACCCCTGCCTGCGCTCTTCGGACTGCACGGACGGCTACTGCTGCGCCCGCCACTTCTGGACCAAGATCTGCAAGCCAGTCCTCCAGCTGGGCGAGGTGTGCACCAAGCAGCGCAAGAAGGGCTCCCACGGCCTGGAAATCTTCCAGCGTTGCGACTGCGCCAAGGGCCTCTCCTGCAAGGTGTGGAAGGACGCCACGCCGTCCTCAAAGTCCAGACTCCACGTGTGCCAGAGGATATGAGGGGGCTGGCAGGCTCGTGCATTTCTAACTGTGAAAGACAAGTATTTAacggagcgagagagagcggaCGGACGGATGGACGGAGGAAAGAGAGACGTGGGGTGGGGGACTTTGCAGACAGTGGCGGCACGTGTGGATCGGACTGATGGACGGACAATGGCAGTCGGGATGCAGAAGAGTCAGCCGCTGGAGTGACTTCCACGTGTACATAATATAATCCACTATAAGTGCCATTCTGAGCTGCAGCGAAGATATTTACCCCTCTAAAGCCACGCTCTTCCCTTGGCTGCCTTCAGTCTGTTTGTAGACGCACATCGCTAAGTCAACTGAGACTGAGCTGGAATGGTGGAACAGTTCTGGAGGGGGACACTCTGGGTCTATATATTGTCTTGTCATGTTTCCATGGTTTGTTCCTggaacatatatgtatatttcccTCTTTCACAGGATCATGTTAGTACAATATACCAAGCCTGTGATCCCAGCTCAACTGGTATATGTCCAATAGAAAAGGATTACAGGGCAACATCTTGGTTTATCTTGGAGAATGTTTCCATCTTGTCTCTGCGGTCACGGAGCTGCcaaatacaatcataataaattcAGTCTGTCGTTAAGATCCACAGCTGTTCGCTTTTCGCTGTATTACCAGCTTTAGCTTCATATAGGCAACTAGtatgaaatgcttttcttaGTTTGACAAGAATCCTGTTAGatactgaatattttaaaagcccCCTCACTTTTCCCAGATATTTTCCAAGAACAAATATAGAtacattctttttctttcatcgAATACCTCTAAACAAACCATGGAGCCTCCACACACGCGTCCGATGCCAATGATGAGATCAGGTGGCATTTGAGTGGCAGATGCAGAGTAAATCATATTGATTTTAGTCACCGGGCACTCAATTGCCAGACTTTTAAAAAGGACCTATAGCAATAGGTAGGACGCCGCAGGCacaactgcacacactgcactcccTTCCTTCTCTGAGACAATGCTGTATTgtacttgtgtttatttatttttcgtcAGAGAAAGTGTGTGCAAACAGACAGATGAATGTGCCGAGCAGCCGAGCAGAACGCAGATCTCAATCAGCAGAGAGAAGCTCGCGGCACAATGACATCCATGTGAAGACAGGGATTGCACAAGCAGTGATCGCATTGTGGACGTAACTTCAGgacatgcaaatcaaatgaTCACACCAGTTTTGCTTAAGAAAAGATTAGGGATAATTAGtattgttgtagttgttgtagATATTGTTGTTTAGTGATCGCCTGTAGAATATATGCTGAGGATTGAGGATATTTAATCCTTATTTAATCCTTATCCTTCATATAGACATAGACATACATGTATATTGctatcacaaaataaaagatgGTTTTCTGAGAAGTTCCATATACAGGGGACCAAACACTTTGCAAACAGTACACGACAACAAATTCTGCTATGATTCGTTGAGCCTTTTCTGGGTGAAATTATGTCCCCCTACTAaattcatatttgttatttcAACTCACAAGGACCACAGTATGTCTTGCAGGGGGTGAAGTCATTTGTCTGTCCCACACACACTGTCGAAGTGGACTGGAGGCTGAATGGCACACTTATTGAGACACAGTTAATCACCCACAGTCTTTTATTCTTTTAGTTTAGctacataatataaaaatatagaaaacagcCCACATGTGGTCACTTTACGTCTGTAAAGTCGTATCGCTGTTTACTTACCCCACAAAATTTTGATATCGGGAAAATGGTAATTCTTTTACAGGTAGTATCTGTAATCTGTATCCCACAGAGaaggacacattttaaatgtaatgccagaaaatgtattccaaGACTTTAATGTCTTCACAGAGTTTGAAAAAatgcactgaattaaaaataatacaaacctTGTATAATGCAACACAACAGTGGGCAAAATGCCACACTTTAATAAGACAATAAACACCATTGTTTGGCCATTGCTGTCATTAAATGGTTGTTTTTCTATATGACACAAATACAGACGGAGGCAGGCTGTGGAAATGTACCAAGATAGTTATATATCTGATTTActaatgaaaaaacacacaaatgcacgaTACCTTTGTATCTAAGCTCAATATCCCGAACAACTTGGGCAGCTCTGAAAAAGGCCGCTGGTGATacttttgctttaaaaacaatattgcaaaataaatattggcaCAGTCTGTTATCAAATCAACCACAACCTGAGTATATATGGGATTTATCTTTTCATCTGCCTCAGTTTTACGAACGTTttcaccatctgcactgtgTTAATTAGCATTCTCTTAATAATATATACCTATTTTTAAGGATATTgggcattattttaatgtactttttccCCAATACAACCatggctttgtattttattaaggcATTATATAGTGTGATTGTTTCCATACTGTGTGTGGAACCTGTCTGTGATCGTTTATTCCTGCCCTTTACTCGTGTAACGTCTCTTCtttcatctgcataaaaatacGAAGCGAGAAgcttttatattgtaaataaaatgtccgttattggaaatgtatttatgaaccAAGGAAATATCATGTACAGATTTGCCTTCTCGTGTTGTTAAGGCAATAAAGGCTGTAACAGGTTAGTAGAAAGTGCTTGTGGTAAGTTATAAAATACCATGGGACCTTACAAGCAGCATGGCTCAAAAACACGTATCAGCGAAtaaaaatgtgccttttaaTGAAAGCATAACCATATTCAAAGCCAGCTGGGTTTGAGCTCGTTAAGTGAACCGAGTTTTGAATATTGAGAACCTAGGGGACAAAATCCCTGAGAATGAAACTGAGAGGACAGTTTGAAAGACATatatttcagttatatatattcCCTGTAAATAGAAACGTGAACACGAACAGTATGTACATTCTTTTAAAAAGCTGTCGCTGATGCATTTTATTAGACCGCAGAAGTTTAACCGGAGATTGCCAAATGTTGGAGAgctgttaatattttataactgtttgaacaaaaatgtattttgaattaattaattaaaaatgtattttgtattatgaaaa

Function

GO: NA

KEGG:

id description
K02165 DKK; dickkopf

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017919 True 3690 mRNA 0.42 4 28955480 28966878

Neighbor

gene id symbol gene type direction distance location
AMCG00017920 papss1 coding upstream 57515 28869874 ~ 28897965 (+)
AMCG00017912 NA coding upstream 167979 28768293 ~ 28787501 (+)
AMCG00017915 NA coding upstream 220343 28721939 ~ 28735137 (+)
AMCG00017913 NA coding upstream 250451 28700043 ~ 28705029 (+)
AMCG00017914 NA coding upstream 263177 28673408 ~ 28692303 (+)
AMCG00017922 NA coding downstream 59137 29026015 ~ 29029373 (+)
AMCG00017923 NA coding downstream 84276 29051154 ~ 29055527 (+)
AMCG00017921 hadh,LOC107594428 coding downstream 89738 29056616 ~ 29060724 (+)
AMCG00017927 NA coding downstream 283509 29250387 ~ 29257707 (+)
AMCG00017931 NA coding downstream 375317 29342195 ~ 29353887 (+)
G94104 NA non-coding upstream 303186 28651148 ~ 28652294 (+)
G94069 NA non-coding upstream 510555 28442766 ~ 28444925 (+)
G94057 elavl2 non-coding upstream 853386 28100733 ~ 28102094 (+)
G94055 elavl2 non-coding upstream 856266 28097733 ~ 28099214 (+)
G94039 NA non-coding upstream 1114219 27841053 ~ 27841261 (+)
G94189 NA non-coding downstream 73132 29040010 ~ 29041944 (+)
G94236 NA non-coding downstream 306869 29273747 ~ 29274011 (+)
G94245 NA non-coding downstream 319315 29286193 ~ 29286745 (+)
G94255 NA non-coding downstream 340222 29307100 ~ 29310853 (+)
G94260 NA non-coding downstream 355694 29322572 ~ 29323345 (+)
AMCG00017910 NA other upstream 308730 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 1258101 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 1958028 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 3903106 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 4239750 24705270 ~ 24715730 (+)
G94275 NA other downstream 466534 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 1852991 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 3440551 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 3494420 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 3540812 32507690 ~ 32601449 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001522 dkk2 coding NC_007112.7 CM002885.2 50392716 ~ 50438247 (-)