Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017921 |
| gene name | hadh,LOC107594428 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 29056616 ~ 29060724 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| hadh | Predicted to enable 3-hydroxyacyl-CoA dehydrogenase activity and NAD+ binding activity. Predicted to act upstream of or within fatty acid metabolic process. Is expressed in liver. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 4. Orthologous to human HADH (hydroxyacyl-CoA dehydrogenase). |
| description |
|---|
| PREDICTED: hydroxyacyl-coenzyme A dehydrogenase, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0006631 | fatty acid metabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0070403 | NAD+ binding | molecular_function |
| GO:0003857 | 3-hydroxyacyl-CoA dehydrogenase activity | molecular_function |
| id | description |
|---|---|
| K00022 | HADH; 3-hydroxyacyl-CoA dehydrogenase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017921 | True | 1306 | mRNA | 0.57 | 8 | 29056616 | 29060724 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017923 | NA | coding | upstream | 1089 | 29051154 ~ 29055527 (+) |
| AMCG00017922 | NA | coding | upstream | 27243 | 29026015 ~ 29029373 (+) |
| AMCG00017919 | NA | coding | upstream | 89738 | 28955480 ~ 28966878 (+) |
| AMCG00017920 | papss1 | coding | upstream | 158651 | 28869874 ~ 28897965 (+) |
| AMCG00017912 | NA | coding | upstream | 269115 | 28768293 ~ 28787501 (+) |
| AMCG00017927 | NA | coding | downstream | 189663 | 29250387 ~ 29257707 (+) |
| AMCG00017931 | NA | coding | downstream | 281471 | 29342195 ~ 29353887 (+) |
| AMCG00017936 | NA | coding | downstream | 308047 | 29368771 ~ 29416813 (+) |
| AMCG00017940 | LOC106610258,LOC102204558 | coding | downstream | 680210 | 29740934 ~ 29756915 (+) |
| AMCG00017941 | NA | coding | downstream | 696830 | 29757554 ~ 29764700 (+) |
| G94189 | NA | non-coding | upstream | 14672 | 29040010 ~ 29041944 (+) |
| G94104 | NA | non-coding | upstream | 404322 | 28651148 ~ 28652294 (+) |
| G94069 | NA | non-coding | upstream | 611691 | 28442766 ~ 28444925 (+) |
| G94057 | elavl2 | non-coding | upstream | 954522 | 28100733 ~ 28102094 (+) |
| G94055 | elavl2 | non-coding | upstream | 957402 | 28097733 ~ 28099214 (+) |
| G94236 | NA | non-coding | downstream | 213023 | 29273747 ~ 29274011 (+) |
| G94245 | NA | non-coding | downstream | 225469 | 29286193 ~ 29286745 (+) |
| G94255 | NA | non-coding | downstream | 246376 | 29307100 ~ 29310853 (+) |
| G94260 | NA | non-coding | downstream | 261848 | 29322572 ~ 29323345 (+) |
| G94308 | bnc2,LOC106936717,LOC106933596,LOC107595060 | non-coding | downstream | 516432 | 29577156 ~ 29577403 (+) |
| AMCG00017910 | NA | other | upstream | 409866 | 28631892 ~ 28646750 (+) |
| AMCG00017898 | kcnip4,LOC103360335,LOC100711851,LOC102780455 | other | upstream | 1359237 | 27472881 ~ 27697379 (+) |
| AMCG00017886 | NA | other | upstream | 2059164 | 26992891 ~ 26997452 (+) |
| AMCG00017843 | NA | other | upstream | 4004242 | 25050309 ~ 25052374 (+) |
| AMCG00017829 | smim14,LOC107700293,LOC107757606 | other | upstream | 4340886 | 24705270 ~ 24715730 (+) |
| G94275 | NA | other | downstream | 372688 | 29433412 ~ 29450347 (+) |
| AMCG00017978 | NA | other | downstream | 1759145 | 30819869 ~ 30831867 (+) |
| AMCG00018012 | NA | other | downstream | 3346705 | 32407429 ~ 32425235 (+) |
| G94838 | clcn3,LOC106577864 | other | downstream | 3400574 | 32461298 ~ 32466636 (+) |
| G94857 | LOC106577504,LOC103385245,LOC108267515 | other | downstream | 3446966 | 32507690 ~ 32601449 (+) |
