AMCG00017928 (LOC100135902,LOC106610344)


Basic Information

Item Value
gene id AMCG00017928
gene name LOC100135902,LOC106610344
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29258505 ~ 29263533 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017928
atgattgGTACACTCCACAGGTTTCAGGATCTAGATTTTGAAGTGCAAGCTTACAACAATCTGAAAGTGGAAGAGGTGCTGAATAAAATTCATGAAGCCTCCCAGTCTGAGCACGTAGATGCCGACTGCTTTGTCTGTGTCTTCCTGAGCCACGGGGAGAACGACCATGTGTACGCCTACGACGCCAAGATCAAAATCCAGGACGTCACGGCTCTGTTCAAGGGAGACAAGTGCAAGAGCCTGGTTGGCAAGCCCAAGATCTTCATCTTCCAGGCCTGTCGTGGAGACCGACACGATGACCCCGTGACGGCCATGGATGTGGTGGACCACAACGCGCAAACCAACGATGTGGTGGTGGACGCTGGGGCCGTCTACACCCTGCCCGCCGGAGCGGACTTCCTCATGTGCTACTCGGTGGCGGAAGGCTACTACTCTCACAGAGAGACCGTCAACGGCTCCTGGTACGTCCAGGACCTGTGCGAGATGCTGCGGCGCTTCGGCAGCACCCTGGAGTTCACCGAGCTGCTCACGCTGGTCAACAGGAAGGTGTCATCGCGCTCAGTGGGCAACTGCCAAGACCGCAGCGCCATCGGCAAGAAGCAGGTGCCCTGTTTCGCCTCCATGCTCACCAAGAAACTGTACTTCAGGTCCAAGAAGGTCTGAGCAGCCCTGAACCCAGAGAGGTCggctctttctttttaatttgttttatacagtatgTCAGGCTGAGGTAGGAAGACTACATTGGTAGTCCATCTGAACACTTCAGTTCTTTGTGAAAGCCATACCTTCTTGTCAGGGTTTTTCTTGGTCAACAGGACTGTTGTATTTTTCAATGTTATCATTTTCTAATCATTCTATTGATTCTGAGGGAGCAGTGTCATCTGGTACACACGGGATACCTATGGGTTTATGTTCTGCCTCGCATTTTTTTCTACTAGTTTTTAAATACCGCATCATGAATTTGTCTTAATATGCTTTGATGGTGAAGTTTTAATACCATCTACCTTAGTATTCAACTTCggtttgcattaaaaaaagatcatGAACTCGGACACTCTGCCACTCGCGGTTTCCATTACGCTGTAGCTCAGTAAAGATTGACATTTTAACTCGGAGAACTGCTGTTACAAGCTAGTTTAATTTCCTACAAGAACACGTTATTATGTCTAATGTATAGCAATAATACTACCATTGGCAAAGAACCCTCATTTTCACTGCTCAGAGAGGGTCTGCTTTTTGACCGACTGCGCTTGGTGTCACTACGGCAAACTTGGGGTCATGCAGCTCAGCAGAGCAGCAGGTAGGATTGTTCTGGACAAACCATAACCATTGTGGTCGGTCCCCCATCACGCTGCGTATGTAGAGGAAGTGCTTCACCCACTTACCTGTGGTGAAATAACGGCACGTTAAcaacaaaaactcctgattttCAAAGACTTAATCTAAAGTGGCAAAAGTTTTTAATAACTTGGTTTCTAGCACCAAGAAAAGATGCTCTGCATATCAGATTAAAGTATAAACTTGAGTCATCTGTGTACTTAATTAGAAAACTACCTACTAACTATATTTGGGACGTTGGttagttgatttaaaaaaagaaatgaaaaatcccctcccctttttaaaaacataaaaaccctCTTCCTTCATTCGGCTGGTTATGggtttgtgtgtgctgtatatAGCGAAAGAGTTAAATGCTTCTGGAAAGTCCTGCAGGGTGTGGCCCCTATTCTCTGTATCAAATCGCTGTTTTAAACGGTGCTCTGGGCGATACACATTTGGCACTCGGCACATGTTTCCACCCCTCTGGCTTTTCGCTTATTCAAATACATCCGAAAAGTCAGTCAAATGAGTCGAGGTTTCTCAGGCCCAGCTGGTGCTTTTGTTCGTCGCAGAAGTATCTCCAGGGCTTGTAGACTCGGTGTAACACAAGCGGAGTCACAACCAAGGAAAACGCATCCCACCGATACAGGGAATCGCTGTCTTTTCCCTTCGGCCCAGTCGCCCCCAACTCCTCGTACGTGTAGCATTCATTCAATGCAAAGCCTCAAAAATTGGGTAACCACTAATGCACAATGTACCCTTTTTTGACATGCAGCTAATAAACCGGTTGGCGTTTTTATAACGTGTTCAGAAAGTGTGTAGTCCTTTCACACCAAGCAGGTACAGAGGGATGAATTCAGCTGATGTTGTCTCACATGGAACAATGTGAAAGTCATTCTTTTAAAACGttttatgtatatgaatatacaaGACTATGCCTTGTGTATCATTTACAGAATATCTCAGGGTTCTGGGGTGCGTGCGTCTGTCCTGTGCAAAGTCATTGTGTCTTACTGACCATCACCAGTTCAGTCATGTCCCTGCATTGAAAGCGGGACATGTCCAGTACATGTACTGCCTTCTGTCCGATGGCTAATTCTGAGGTCTTCCCGTGTGCTACACTGAGTGCTTTTCCCTGTCGGTGTAATGTGAATGGTGTGGAAAAGGGGGTGAAACGGCACATAGCCCAGTCTTTCAGATGCTTAAAATGGTAGCGTTTCATGTGGGAAGTCTGTCAATCCATGGTGACTGTTTCACTAATCACACTTTGTACTGCATTGGGAGAGAAAACAATCTTCAATTTCCGACCCTTGTAGCACGTCTACAGGAGCCCTCTCTTCAGCGAAC

Function

NR:

description
caspase 6 precursor

GO: NA

KEGG:

id description
K04396 CASP6; caspase 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017928 True 2676 mRNA 0.46 4 29258505 29263533

Neighbor

gene id symbol gene type direction distance location
AMCG00017926 lef1,LOC103361279 coding downstream 140863 29100508 ~ 29117642 (-)
AMCG00017925 lef1 coding downstream 166565 29079009 ~ 29091940 (-)
AMCG00017924 aimp1,LOC107684278,LOC107675933,LOC107729369 coding downstream 209108 29031879 ~ 29049397 (-)
AMCG00017918 NA coding downstream 406353 28846378 ~ 28852152 (-)
AMCG00017917 tbck,LOC102796740 coding downstream 416869 28814981 ~ 28841636 (-)
AMCG00017929 LOC104953273 coding upstream 5748 29269281 ~ 29272932 (-)
AMCG00017930 NA coding upstream 9518 29273051 ~ 29273284 (-)
AMCG00017933 NA coding upstream 11361 29274894 ~ 29283831 (-)
AMCG00017935 NA coding upstream 25296 29288829 ~ 29304804 (-)
AMCG00017932 ttc39b,LOC106578215 coding upstream 43550 29307083 ~ 29332479 (-)
G94218 NA non-coding downstream 50701 29207470 ~ 29207804 (-)
G94137 NA non-coding downstream 522761 28733824 ~ 28735744 (-)
G94074 NA non-coding downstream 833262 28425032 ~ 28425243 (-)
G94073 NA non-coding downstream 838243 28419916 ~ 28420262 (-)
G94060 NA non-coding downstream 1161347 28093468 ~ 28097158 (-)
G94246 NA non-coding upstream 22674 29286207 ~ 29286747 (-)
G94337 NA non-coding upstream 648449 29911982 ~ 29914837 (-)
G94358 NA non-coding upstream 732716 29996249 ~ 29997513 (-)
G94359 NA non-coding upstream 734821 29998354 ~ 30002282 (-)
G94392 NA non-coding upstream 845438 30108971 ~ 30109182 (-)
G94172 NA other downstream 382582 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 1113916 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 1418715 27838251 ~ 27839790 (-)
G93796 NA other downstream 3148431 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 3150700 26104026 ~ 26107805 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 5702 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 1322196 30585729 ~ 30596417 (-)
G94543 NA other upstream 1364455 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 2996174 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 3008161 32271694 ~ 32276372 (-)

Expression


Co-expression Network