AMCG00017929 (LOC104953273)


Basic Information

Item Value
gene id AMCG00017929
gene name LOC104953273
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29269281 ~ 29272932 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017929
ATGCGGGGCGTCTGCGTGGCGCTGCTGCTGTCCGCCGGGGTGGTCCTGTGCTCCTGCCAGGCAGCCCCCCGCGACCCGCAGACCCCGGACTGGCGCCTGACGCTCAAGACCATCCGGAACGGCGTCCACAAGATCGACACCTACCTGAACGCGGCGCTGGACCTGCTGACGTGTCATCTGCTGTCAGGACAGGTTTCTGGTTTGGAGGACGAGCGCAGGCAGCGGCAATGGTATAAACCAGTTCCCCGCCATGGCTACAAACCACCCCCACCCAACGGATGTGGATCCCCCCTGTTTGGAGTTCATTTTGACATCGGCATCCCCTCCATGACCAAGTGCTGCAACCAGCACGACCGCTGCTATGACACCTGCGGCAAGGACAAGCACGACTGCGACGAGGCCTTCCAGTTCTGCCTGGCGACCATCTGCAGGAACGTCCAGAAGACCTTGGGCTTGTCTCAGAGTGTCCAAGCCTGCGAGTCCACGGTGAGCCTGCTGTTTGATGCTGTCATGCACTTGGGGTGTAAGCCGTACCTGGACAGCCAGCGCGCATCCTGTATGTGTCGCTATGAGGAGAAACTGGACCTGTGAGGGGAGCCCAGGCTGTGAGGACTATTGACAACACGGCCAGATCTTTCTCTCGTGCCTTAATTAAGAGGACAGTGGGACGGTCATTCTTGATTCTTGATGTTGCTGACACCCAACGAAGGACAGTAACAGACTGTGAGGGACTGACACTGTGATTGCACCATTCTCTGCATTTATTCTTGTTATGTACAGACATTATTTTGTTGCTTGTCTGTTTTTAGTGTTCAATTTTTTTCTAAATAGTTTCTAAACATCTCACACTCTGTACCACATTTGAatagaagtaaaacaaattgtatCTAATATGCATTGTTGCCTCAAGGCAATAAACCTTTATTGTAATTGTGGTGGTTAAAACACACAGTGCCTTAATATGTACTTTAATTGTTACCCTGATATTCACTGCCAGATGGATATTGTCCAACATGATTGGGATAGTAAAGCAAAATGTGtctacagtgtgttgtgtttgtctgaaaataaatcttagTTGCTGATGATATCGTATCGATCTGGGACTGTTCTGTTGAGGGACCATAGTGTATcgtctgtctgtcagttctgtgtgCTTGGGATGGGGCAGATCTTTCTGGATCTGATTAAGTGAGCAAAACTGGATTCTGGGGTCCCAAAGGTTAACCCCACGTGAGAACAGGAGGGGTGCTGTGATTGGGGTCACAGGGAGCCAGAGATATATAGAGGTGCCTCAGAAGTGGTTTAGAGAGACTGAGCTCAGTGTGTCtttgaaagctgtttttttcccaGAAATAAACCTGTAGCAGGAATCCCG

Function

NR:

description
PREDICTED: group XIIA secretory phospholipase A2-like, partial

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017929 True 1378 mRNA 0.50 5 29269281 29272932

Neighbor

gene id symbol gene type direction distance location
AMCG00017928 LOC100135902,LOC106610344 coding downstream 5748 29258505 ~ 29263533 (-)
AMCG00017926 lef1,LOC103361279 coding downstream 151639 29100508 ~ 29117642 (-)
AMCG00017925 lef1 coding downstream 177341 29079009 ~ 29091940 (-)
AMCG00017924 aimp1,LOC107684278,LOC107675933,LOC107729369 coding downstream 219884 29031879 ~ 29049397 (-)
AMCG00017918 NA coding downstream 417129 28846378 ~ 28852152 (-)
AMCG00017930 NA coding upstream 119 29273051 ~ 29273284 (-)
AMCG00017933 NA coding upstream 1962 29274894 ~ 29283831 (-)
AMCG00017935 NA coding upstream 15897 29288829 ~ 29304804 (-)
AMCG00017932 ttc39b,LOC106578215 coding upstream 34151 29307083 ~ 29332479 (-)
AMCG00017934 psip1 coding upstream 82107 29355039 ~ 29365548 (-)
G94218 NA non-coding downstream 61477 29207470 ~ 29207804 (-)
G94137 NA non-coding downstream 533537 28733824 ~ 28735744 (-)
G94074 NA non-coding downstream 844038 28425032 ~ 28425243 (-)
G94073 NA non-coding downstream 849019 28419916 ~ 28420262 (-)
G94060 NA non-coding downstream 1172123 28093468 ~ 28097158 (-)
G94246 NA non-coding upstream 13275 29286207 ~ 29286747 (-)
G94337 NA non-coding upstream 639050 29911982 ~ 29914837 (-)
G94358 NA non-coding upstream 723317 29996249 ~ 29997513 (-)
G94359 NA non-coding upstream 725422 29998354 ~ 30002282 (-)
G94392 NA non-coding upstream 836039 30108971 ~ 30109182 (-)
G94172 NA other downstream 393358 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 1124692 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 1429491 27838251 ~ 27839790 (-)
G93796 NA other downstream 3159207 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 3161476 26104026 ~ 26107805 (-)
AMCG00017972 dcaf10 other upstream 1312797 30585729 ~ 30596417 (-)
G94543 NA other upstream 1355056 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 2986775 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 2998762 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 3012553 32285485 ~ 32308080 (-)

Expression


Co-expression Network