AMCG00017931


Basic Information

Item Value
gene id AMCG00017931
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29342195 ~ 29353887 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017931
ATGGCGGCGTGCAGCGAGGCGGCGGAGGAGCCAGTGTTGGACGTCAATGTACCGACATACGAGTATATAGACGTGAACACCAAAGCTTTCCATGTGGGCTCGTTTGCCAGGCTGTGGCGGGAGAAGCTGCCGCCCGGCCTCCTCTCCCTGGATCACAGGCCGGAGGGGGCGGCGGAGGAAGCGGCCGAGGACGCCGCGTTTGCAGAGGAGATGAGCATCCCGGCGGACATCGTGGAGGAAGTCAAACTGGTaCTTCGGAAGAGGAAGCAGGATTATCGCGAGTCGCTGGCGATTGATCGCACAGACTCACTGACCCCGGGGGAGATCATCCTGAGCATGAACATCTTGTACCCGCTCATCTTCAGGAAGTTCAAGACCCACCGGCGTTTCCAGAGCATCCAGGTGCTGGGCTGGCAGAAGCTGAGTGCGCTGAAGGACGCCATCTGCTGCGTGAGCGACCTGCAGGTCAGCGGGGAGTTCAGCAACACCCCCGACCTGGCGCACGAGCACGTCAACAAGGACCACTTCAAGTCCAGCTATTTTTATTTCGAGGGGGTCTTGTACGATGACATGAGGTTCCCGGAGTGTACTGAGTTGAGCCAGACCGTCGTGGAGTGGGCCCGGGACCACGACTCCGGCCACGGGGAGCTCCGGACGGCGAGGATGGAGGACACCACGTTCAACGACCTGAAAATCAAGATCGGTTTCCCTTACCTGTACTGCCACCAGGGAGACTGCGAACACGTTCTGGTCTTCACCGACATCAGACTGGCCCATCGAGACGACTGCCTGGACAAGACGCTCTACCCCCTCCTGACCAAGAAGCACTGGCTCCAGACGCGGAAGTGCTCCGTGTGCAACATGTACATCCCCAGGTGGGTGACCAGCAACGACCCCTTCGCCCCAGAGGACCCCTGCCTGTTCTGCGAGACGTGCTTCCGGATGCTGCACTACGACAACCACGGCCACAAGCTGGGGGACTTCTTGGCCTACCCCTACGTGGACCCGGGGACCTTCAACTAGGGGCCAACAAATGGGTTGTGAACTTGTTTGTTGGAGAGCAGGGGATCAAAGCAGGCCTGGAGCCGTACAGAGCGCTTGTGTTTTGTTAATCGTTGATGATGCAACGGACTATGGGGAAGATAAATCTATTTCAGTACCGTTAACTAGATCAAACTTCTGAATAAAGACTCGGTATTCGTAGAACTTCCTACAGCTTGAGTTTGTGTGAACGGAGCGATCTGATCAACTTCGACATTTAGGATTTTAGCGTCTCTGCTTTATGTCCGACGCAGAGGATGACTTTCCATTCAGACTGTGGACAATTTAGTGGGTCACAGAGCCTTTATCCTGAGATCTGCACAACCGTGAAGCTTCAGCTGAGCGCCAAACAAGCTGCAGATCTTCACCCAGGAACCGCTTTGTTCAGTTCAACAGTGAAGGGAGGAGAAAAGCATCTGAACGCCGAACGTTTCTTCAGTGCCACAGGACCTTCCTTCAGTCGTTCCTTTTGAAAGGTTTAACCCATTGCTGTTTAACCCAagatgtttgtgtctttgt

Function

GO: NA

KEGG:

id description
K15210 SNAPC3; snRNA-activating protein complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017931 True 1560 mRNA 0.55 8 29342195 29353887

Neighbor

gene id symbol gene type direction distance location
AMCG00017927 NA coding upstream 84488 29250387 ~ 29257707 (+)
AMCG00017921 hadh,LOC107594428 coding upstream 281471 29056616 ~ 29060724 (+)
AMCG00017923 NA coding upstream 286668 29051154 ~ 29055527 (+)
AMCG00017922 NA coding upstream 312822 29026015 ~ 29029373 (+)
AMCG00017919 NA coding upstream 375317 28955480 ~ 28966878 (+)
AMCG00017936 NA coding downstream 14884 29368771 ~ 29416813 (+)
AMCG00017940 LOC106610258,LOC102204558 coding downstream 387047 29740934 ~ 29756915 (+)
AMCG00017941 NA coding downstream 403667 29757554 ~ 29764700 (+)
AMCG00017942 NA coding downstream 452753 29806640 ~ 29833363 (+)
AMCG00017943 LOC108276379,LOC100698524,LOC102195089,LOC102797997 coding downstream 548928 29902815 ~ 29912178 (+)
G94260 NA non-coding upstream 18850 29322572 ~ 29323345 (+)
G94255 NA non-coding upstream 31342 29307100 ~ 29310853 (+)
G94245 NA non-coding upstream 55450 29286193 ~ 29286745 (+)
G94236 NA non-coding upstream 68184 29273747 ~ 29274011 (+)
G94189 NA non-coding upstream 300251 29040010 ~ 29041944 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding downstream 223269 29577156 ~ 29577403 (+)
G94310 NA non-coding downstream 296903 29650790 ~ 29651074 (+)
G94348 NA non-coding downstream 624266 29978153 ~ 29980642 (+)
G94505 NA non-coding downstream 1185081 30538968 ~ 30544554 (+)
G94522 dcaf10,LOC102795877 non-coding downstream 1231823 30585710 ~ 30591176 (+)
AMCG00017910 NA other upstream 695445 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 1644816 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 2344743 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 4289821 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 4626465 24705270 ~ 24715730 (+)
G94275 NA other downstream 79525 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 1465982 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 3053542 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 3107411 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 3153803 32507690 ~ 32601449 (+)

Expression


Co-expression Network