AMCG00017934 (psip1)


Basic Information

Item Value
gene id AMCG00017934
gene name psip1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29355039 ~ 29365548 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017934
ATGACTCGAGATTTCAAGTCGGGGGATCTGATTTTCGCCAAGATGAAAGGCTATCCACACTGGCCGGCCCGGATCGACGAAGTCCCCGATGGAGCCGTGAAGCCGTCCACCGCCAAGCTGCCCATCTTCTTCTTCGGCACGCATGAGACCGCGTTCTTGGGCCCCAAAGACATCTTCCCGTATTTACCGAACAAAGACAAATATGGCAAGCCCAACAAGCGGAAGGGCTTCAACGAGGGCCTGTGGGAGATCGAGAACAACCCTAAGGTGGAGCTCACTGGTCCGAAGGTCGCTAAACGCGCCCGCCTGGCAGCCGCTGACCCCGAGGGCGAGCAGGACGAGCCGGCGGGGGTCACGGACGACTCGGAGCCGATGCCCGAGTCTGCGGATGACTCGGCCCAGAAGGGAACCCCGGACACTCCGGTGAAAGCCAAGAGGGGACGGAAGAAGAAGagtgAGACCGAACAGGACTCGGAGAGGGATGAGGTGCCGACCAGCCCCGCCTCCAGCCCTCCAGTGGCCGAGGCGCTCACTCCGAAGCGCAGGGGTCGGAAACCCAAAGCAGAAAAGTTGCTGCTtttacaacagcagcagcagcagcagggcccCCCGGACCCCCGCAGCTCTGGGAGTGAAATGGACTCCAGCGAGCCGGAGAAGAAGAGGAAGCGCGGCCCGGAGGACAAGTCCGCCAAGGCCCAGAGAGCGGACAACGACGAGGACAGGAAGACGGacgggaggaagaggaaggaggaggcCGAGGGCAAGAAGGAGCCAGAGGCCAAACGGAGGAGGAACGCCAAGGGGGACACGTCGTCCGAGtcggaggaggatgaggaggcgAGTACGCGGTCTCTCGGCTGTAAGAATAAGAACGACAGGTTCGCGGCGGCCAGGAGGCGCAACCTGCTGAAGGCGCAGCACGAGGCCCTGGAGATGGACGAGCGCCGGCGCAAGCAGGACGAGCCGAAGGCCGCGGAGCAGGGcaaggaggaggggaagaaaggaGAGGAGAAGAAAGTAGACAAGAAGAAAGACGTGTCGACGGAGGCAAGGCTGCAGAGGCTACACGGAGACATCAAGATATCCCTGAAGATTGACAACCCTGACGTGAAGAAGTGCATCGAGGCGCTGGACGAGCTGGGCACACTGCAGGTCACCACCCAGCACCTGCAGAAGCACAGCGAACTCATCGCCACGCTCaaaaagATCCGCAGGTTCAAAGCCAGCCAGGACATCATGGACAAGGCCACGATGCTCTACAACAAGTTCAAGACCATGTTCCTGGTGGGTGAGGGCGACTCGGTGCTCAGCCAGGTGCTCAACAAGTCCCTGGCGGAGCAGCGGCAGCACGAGGAGGCCAAGAAGGGCGCGCTGAAGAAGGCAGAGCAGGCCAGGGATCAGGGGACAGAGAACAAGGCGGTGAACGGGGACGCCAGCCCCGGGGAGGGCAGCCCAGCCCAGCGGGACGAGGACGGGGACCAGAGGGCGGAAGAGTGTGGCCCGGCGGAGCACAGAAAGGCGTGCTCAGTGTTCGGTGTAGAGCTGCCCTGA

Function

symbol description
psip1 Enables DNA-binding transcription factor binding activity; chromatin binding activity; and transcription coactivator activity. Involved in mRNA 5'-splice site recognition and positive regulation of transcription by RNA polymerase II. Located in heterochromatin; nuclear periphery; and nucleoplasm.

NR:

description
PREDICTED: PC4 and SFRS1-interacting protein isoform X2

GO: NA

KEGG:

id description
K25057 PSIP1, LEDGF; PC4 and SFRS1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017934 True 1554 mRNA 0.62 15 29355039 29365548

Neighbor

gene id symbol gene type direction distance location
AMCG00017932 ttc39b,LOC106578215 coding downstream 22560 29307083 ~ 29332479 (-)
AMCG00017935 NA coding downstream 50235 29288829 ~ 29304804 (-)
AMCG00017933 NA coding downstream 71208 29274894 ~ 29283831 (-)
AMCG00017930 NA coding downstream 81755 29273051 ~ 29273284 (-)
AMCG00017929 LOC104953273 coding downstream 82107 29269281 ~ 29272932 (-)
AMCG00017938 NA coding upstream 159887 29525435 ~ 29527497 (-)
AMCG00017937 bnc2,LOC107737408,LOC107737409,LOC107678088 coding upstream 172607 29538155 ~ 29544905 (-)
AMCG00017939 bnc2,LOC106933596 coding upstream 211561 29577109 ~ 29584432 (-)
AMCG00017947 NA coding upstream 599951 29965499 ~ 29966626 (-)
AMCG00017944 trmo coding upstream 605542 29971090 ~ 29975805 (-)
G94246 NA non-coding downstream 68292 29286207 ~ 29286747 (-)
G94218 NA non-coding downstream 147235 29207470 ~ 29207804 (-)
G94137 NA non-coding downstream 619295 28733824 ~ 28735744 (-)
G94074 NA non-coding downstream 929796 28425032 ~ 28425243 (-)
G94073 NA non-coding downstream 934777 28419916 ~ 28420262 (-)
G94337 NA non-coding upstream 546434 29911982 ~ 29914837 (-)
G94358 NA non-coding upstream 630701 29996249 ~ 29997513 (-)
G94359 NA non-coding upstream 632806 29998354 ~ 30002282 (-)
G94392 NA non-coding upstream 743423 30108971 ~ 30109182 (-)
G94483 NA non-coding upstream 1090650 30456198 ~ 30461173 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 81871 29269235 ~ 29273168 (-)
G94172 NA other downstream 479116 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 1210450 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 1515249 27838251 ~ 27839790 (-)
G93796 NA other downstream 3244965 26109060 ~ 26110074 (-)
AMCG00017972 dcaf10 other upstream 1220181 30585729 ~ 30596417 (-)
G94543 NA other upstream 1262440 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 2894159 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 2906146 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 2919937 32285485 ~ 32308080 (-)

Expression


Co-expression Network