AMCG00017940 (LOC106610258,LOC102204558)


Basic Information

Item Value
gene id AMCG00017940
gene name LOC106610258,LOC102204558
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29740934 ~ 29756915 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017940
ATGGCTACAAAGCAGAGCGATCAGGGACGCATTTTGCTGCTGGAAGAAGAAATCAGGAGTCTGTCTGAGGAGCTAGTGCAGTGCCAGGCGGATAAAGAGTTTGTGTGGTCATTATGGAAACGGCTTCAGGTGGCCAACCCAGACCTGACCCAGGCGGTGAGCTTGGTCGTAGAACGagAGAAGCAAAAAGCAGAAGCCAAAGACAGGAAAGTGCTGGAGATTCTGCACATCAAGGACAGTAAAATAcaggagctggagcagCGAGTGACAGGCCAGCAGCAGGAAATCAACAACCTGCTCCAGAGGAAGATATCCGTGGATGAGGAGAAGGGCTTAATGAAAAAAGAGCTGACTGCTCTGCGCCAGAAAGTCGAGGATAAGAGTCAAGAACTTAAGGATTTTAAGGAGCGGACGAAGAAGAAAGAGCAGGAGCAGCGGCGTGTTGTGAGGGAtctggaggaggggaaggaagGATTAGACGCACGCTGCTCTGACCTGCTAAGTGACCTGGAGAAACTGCAGAAGCAGGCGGCCCAGTGGAGGCAGGAGAAGTCTGGCATCGACTCCAAAGTCAAGGTAACAccgaggagagggggaggaggaggaggaggaggagtgtgggGGGCGAACGCGAACGGAGGGACTGCCTGCGAAGACGAGAGGAAGGGTTCCCTTCTTCTCGGCTTTCTTCCACGCGCCTCGGACATCTCTCCGCAAACATGA

Function

NR:

description
PREDICTED: centlein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017940 True 723 mRNA 0.54 5 29740934 29756915

Neighbor

gene id symbol gene type direction distance location
AMCG00017936 NA coding upstream 324121 29368771 ~ 29416813 (+)
AMCG00017931 NA coding upstream 387047 29342195 ~ 29353887 (+)
AMCG00017927 NA coding upstream 483227 29250387 ~ 29257707 (+)
AMCG00017921 hadh,LOC107594428 coding upstream 680210 29056616 ~ 29060724 (+)
AMCG00017923 NA coding upstream 685407 29051154 ~ 29055527 (+)
AMCG00017941 NA coding downstream 639 29757554 ~ 29764700 (+)
AMCG00017942 NA coding downstream 49725 29806640 ~ 29833363 (+)
AMCG00017943 LOC108276379,LOC100698524,LOC102195089,LOC102797997 coding downstream 145900 29902815 ~ 29912178 (+)
AMCG00017946 NA coding downstream 196552 29953467 ~ 29954534 (+)
AMCG00017948 anp32b coding downstream 233731 29990646 ~ 30002319 (+)
G94310 NA non-coding upstream 89860 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 163531 29577156 ~ 29577403 (+)
G94260 NA non-coding upstream 417589 29322572 ~ 29323345 (+)
G94255 NA non-coding upstream 430081 29307100 ~ 29310853 (+)
G94245 NA non-coding upstream 454189 29286193 ~ 29286745 (+)
G94348 NA non-coding downstream 221238 29978153 ~ 29980642 (+)
G94505 NA non-coding downstream 782053 30538968 ~ 30544554 (+)
G94522 dcaf10,LOC102795877 non-coding downstream 828795 30585710 ~ 30591176 (+)
G94555 NA non-coding downstream 961263 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 1567609 31324524 ~ 31340832 (+)
G94275 NA other upstream 290587 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1094184 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2043555 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 2743482 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 4688560 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 1062954 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 2650514 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 2704383 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 2750775 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 3032526 32789441 ~ 32793604 (+)

Expression


Co-expression Network