AMCG00017942


Basic Information

Item Value
gene id AMCG00017942
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29806640 ~ 29833363 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017942
ATGTGCTTTGTTCCCCCGGCAGAGCTGCGCTCCAGACTGGGGGAAGATGGAGGGGTCAGGAGCAGCACTCCCAAAAAGGAGGGCGAAGACAGAGCGGAGCGCTCATTAAAACAGGTCGCACAGCTGGAGAGGAAGCTCCGCACCCTagagaaggagatggagaggCTGAAGGAGACCAACGCGGAGCTGGGCCGGGCTCGAGACACACTGCAGGCCTCGCTGGCCCGTCTGCGCAGCCAGGGGGAGGCCAGGGAGGCGGCGGCCAGGGAGGAGCGGGAGCAGCTGCTGACCGCCGTGGCCGAGCTGGAGGGCCGGGTGTCCGCGCTGAGGAGGCAGGCGGCCGGCGCCAAGGAGCTGAGGAGGGAGCGCGGCGTGATGCTGCGGCGGATGCAGGAGCTGCGGAGGGAGCTGGGCATCGCTCGGGCCGCCAGGGGACCGGGTGCCAGAGGGCCGCCCTGCTGCAGGGCCGGGGCCGCCAAGGTCAGGCTCCGAGCGGCCCGGCCTGGCACCTCCCTCCGACGCCGGCAAGTTTTCCTCAACCAGTCCATCAAGGAGCAGAGCGCCGTGTTCGAGGACTTCAACAGGGACGGCTGGGAGGACCTGAGCGCAGACAGCGACAGCGCCGAGGGAAGCTGGGACAGCCTGGGCGAGGTCACAGCAAGGTCAGCGAGGATCAGACGTCTGTCCCGGGAGACAGATGACTCGGCGGGCAGCAGTGGAGAGAGCGATGGGACGCGAGACACCCCACCGCGCCGCCCGGGGCCCCGCCCAGGGCCCAGGCTTTTTAAGggCTGTGCAAACTGTGAAAAGGAAAAGAGGAAAGTCCAAAAAGACAAGAGCCGCCGGCCTCGGTCTACTGACCCGTCACAGCAAGAAGAAAGTAAACAGGAGCAGAAGAGGCAGAAGCAGTCCGGGGCCCAGAAGAGACGTCTCTCACTGGCGTTGCAGCAGCGCATCGTATCTCTGAAGCAGCAGATATCTGTTCTGCAGGCCGGGTGGAGAGACGCGCGGCGCACCGCCAGGGAGCTGAGAGAAACCAACAAGCAGACAACATCACAGATGAACTCGCTCGCCCAGAGACTTCAGATCAGCAAGCAGGTTTCACAGAAGCTGACCTCCGACCTGGCGGCGCTCCAGCTGCAGAAGGACGAGTTGGAGAGGGAGGTGGGGCAGCTGAAACAGCAACTGCAGACCCTGACCGACAGGGCCGCGCAGGAGGCGCCCCCTCCGGCCCCCAGGCCGAGCCAGGACCCCCCCGGCCCCTCGCCGAAGCAATTGGAAACGGAAATAAAGCATCTCCAGAACAAGCTGAAGATCGCATCTAATGAGGTAACGAGGCACACAGCTGCCAATAAAGCCCTGAAAGCCGACTTGCAGGAGAAGGAAGAGCAGATCGGGGAGCTACAAGACAAGGTTTCTCGTATGGAAAGAGACGTCGGCATGAAACGGCAGCTGGTAGAAGATTTTAAATCCAGAATGAAATCATTTCAGGAAAACGATAAGACCCACAGACAGCTCATCGAAGAACTGGAGAAGAAAGCGTCCAACAGGAAGACGTGCATCGACTCCCTGAAGCAGAGGCTCAGCGTGGCCACCAAGGAGAAGAGTCAGTACGAGCTGACGAGCCGCAAGCTGAGGGACGATTTGGACAAGAAGAGCCAGAAGCTGCAGGAGCTCCAGTCCAAGGTGGCCGAGTGTGAGGCGGCCATGGCGGAGCTGGAGGAGACGGCGTCGCAGCAGATGCACGGGCTGGCGCTGCAGAGCGGACAGGCCCTGGAGGGCGTCCAGAAGAAGCTGGGCCTCGCACACCGGCAGCGGGAGGAGCTGGTGGCCTTCATTAAGACGCTGGCGTTGGAGATGCACTCAGATTCGCAGGAGACGAGAGCCCAGATCAGGAAAGCGAGGAAGCGGAGGCAGGAGGGCTCGGACACGGGACTGTCCACCGAGTCGATGAGCCGGGCGCAGTCCATCGCGGCGTCCATCCTGAACATGTCCCAGGCGGACCTGCAAGACATGCTGGACACCGAGCAGCAGGAATCTGAAGATGTCCGAGCCGAGAGGAGGAAAGACCAGGACTGGCTGGATCGGGTTCAGGGGATCCTCGGGCAGCAG

Function

GO: NA

KEGG:

id description
K16467 CNTLN; centlein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017942 True 2112 mRNA 0.63 12 29806640 29833363

Neighbor

gene id symbol gene type direction distance location
AMCG00017941 NA coding upstream 41940 29757554 ~ 29764700 (+)
AMCG00017940 LOC106610258,LOC102204558 coding upstream 49725 29740934 ~ 29756915 (+)
AMCG00017936 NA coding upstream 389827 29368771 ~ 29416813 (+)
AMCG00017931 NA coding upstream 452753 29342195 ~ 29353887 (+)
AMCG00017927 NA coding upstream 548933 29250387 ~ 29257707 (+)
AMCG00017943 LOC108276379,LOC100698524,LOC102195089,LOC102797997 coding downstream 69452 29902815 ~ 29912178 (+)
AMCG00017946 NA coding downstream 120104 29953467 ~ 29954534 (+)
AMCG00017948 anp32b coding downstream 157283 29990646 ~ 30002319 (+)
AMCG00017953 NA coding downstream 233314 30066677 ~ 30089697 (+)
AMCG00017951 NA coding downstream 257603 30090966 ~ 30106897 (+)
G94310 NA non-coding upstream 155566 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 229237 29577156 ~ 29577403 (+)
G94260 NA non-coding upstream 483295 29322572 ~ 29323345 (+)
G94255 NA non-coding upstream 495787 29307100 ~ 29310853 (+)
G94245 NA non-coding upstream 519895 29286193 ~ 29286745 (+)
G94348 NA non-coding downstream 144790 29978153 ~ 29980642 (+)
G94505 NA non-coding downstream 705605 30538968 ~ 30544554 (+)
G94522 dcaf10,LOC102795877 non-coding downstream 752347 30585710 ~ 30591176 (+)
G94555 NA non-coding downstream 884815 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 1491161 31324524 ~ 31340832 (+)
G94275 NA other upstream 356293 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1159890 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2109261 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 2809188 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 4754266 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 986506 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 2574066 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 2627935 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 2674327 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2956078 32789441 ~ 32793604 (+)

Expression


Co-expression Network