AMCG00017943 (LOC108276379,LOC100698524,LOC102195089,LOC102797997)


Basic Information

Item Value
gene id AMCG00017943
gene name LOC108276379,LOC100698524,LOC102195089,LOC102797997
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29902815 ~ 29912178 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017943
ATGCTTGTCTGTTTCTGTCCTCTCTTGCAGAAAGTGAGTGAGAAGGTTGGTGGAGCCGAGGGAACCAAACTCGACGATGACTTcaaagaaatggaaaagAAAGTGGACATCACCAGCAGGGCTGTGTTGGAGATTATGACCAAGACCACGGAGTACCTCCAGCCCAACCCAGCCTCCCGGGCAAAGCTGAGCATGATCAATACCATGTCCAAGATCCGAGGTCAAGAGAAAGGTCCCGGGTACCCACAGGCGGAGACAGTGCTGGGAGAAGCCATGCAGAAGTTCGGCAGGGAACTCGGGGACGATTCCAACTTCGGTTTCGCTCTCATCGACGCTGGGGAGGCCATGCGGGAGCTCGGCGAGGTGAAGGATGCTCTCGATATGGAAGTGAAGCAGAATTTTATCGACCCCCTGCAGAACCTGCACGACAAAGACCTCAAGGAAATACAGCATCACTTGAAGAAGATGGAGGGCCGGCGTTTGGACTTCGACTATAAGAAGAAGAGGCAGGGCAAGCTGCAGGACGACGAGATCAAGCAGGCCCTGGAGAAGTTCGACGAGTCGAAAGAGGTGGCGGAGCAGAGCATGTTTAACCTGCTGGAGAGTGATATCGAACAGGTGAGCCAGCTGGCCGCCCTGGTGCAGGCGCAGGTGGAGTACCACAGGCAGGCCACCGAGATACTGCAGCAGCTGTCCAGCAAGATCGAGAACAGAATAAGGGATGCTTCCAGCAAGCCCAGGAGAGAGTACATGCCCAAACCTCGCATGGTGATGGAGTTCACTCCGAGCGAGAACCAGAACGGAGGGATCGCTCACAGCGGATCTGCCAAATCCCCGGcccCCATGGACCAGCCCTGCTGCCGCGCTCTGTATGACTTTGACCCAGAGAACGAGGGCGAGCTGGGCTTCAAGGAGGGCGACATCATCACCCTGACCAACCAGATCGATGACAACTGGTACGAGGGGATGCTGCACGGCCAGTCGGGGTTCTTCCCCATCAACTACGTGGATATCCTGGTCCCTCTCCCTCACTAA

Function

NR:

description
PREDICTED: endophilin-A1-like isoform X2

GO: NA

KEGG:

id description
K11247 SH3GL; endophilin-A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017943 True 1035 mRNA 0.56 8 29902815 29912178

Neighbor

gene id symbol gene type direction distance location
AMCG00017942 NA coding upstream 69452 29806640 ~ 29833363 (+)
AMCG00017941 NA coding upstream 138115 29757554 ~ 29764700 (+)
AMCG00017940 LOC106610258,LOC102204558 coding upstream 145900 29740934 ~ 29756915 (+)
AMCG00017936 NA coding upstream 486002 29368771 ~ 29416813 (+)
AMCG00017931 NA coding upstream 548928 29342195 ~ 29353887 (+)
AMCG00017946 NA coding downstream 41289 29953467 ~ 29954534 (+)
AMCG00017948 anp32b coding downstream 78468 29990646 ~ 30002319 (+)
AMCG00017953 NA coding downstream 154499 30066677 ~ 30089697 (+)
AMCG00017951 NA coding downstream 178788 30090966 ~ 30106897 (+)
AMCG00017950 LOC107748929,LOC102308595 coding downstream 230043 30142221 ~ 30146091 (+)
G94310 NA non-coding upstream 251741 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 325412 29577156 ~ 29577403 (+)
G94260 NA non-coding upstream 579470 29322572 ~ 29323345 (+)
G94255 NA non-coding upstream 591962 29307100 ~ 29310853 (+)
G94245 NA non-coding upstream 616070 29286193 ~ 29286745 (+)
G94348 NA non-coding downstream 65975 29978153 ~ 29980642 (+)
G94505 NA non-coding downstream 626790 30538968 ~ 30544554 (+)
G94522 dcaf10,LOC102795877 non-coding downstream 673532 30585710 ~ 30591176 (+)
G94555 NA non-coding downstream 806000 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 1412346 31324524 ~ 31340832 (+)
G94275 NA other upstream 452468 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1256065 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2205436 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 2905363 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 4850441 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 907691 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 2495251 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 2549120 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 2595512 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2877263 32789441 ~ 32793604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022667 sh3gl2b coding NC_007134.7 CM002907.2 45043301 ~ 45049044 (-)
grasscarp (Ctenopharyngodon idella) CI01000129_01549049_01553421 SH3GL2 coding CI01000129 null 1548773 ~ 1553421 (-)
mexican tetra (Astyanax mexicanus) G234148 LOC108414753,LOC107595059 unknown NW_019170844.1 APWO02000442.1 208420 ~ 217202 (-)