AMCG00017946


Basic Information

Item Value
gene id AMCG00017946
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29953467 ~ 29954534 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017946
ATGCCGGTGGTAAAAGTGGAGAAGGACTCTTCCTCCGATCGCTGCGACCTGACCACCTACCCGGCCTACGTGCATGAGCCGCCGGTCTTCGCGCCGGTGCAGGTGCCCCGCTCGGCCTATGCCAACTCCGTGTACCCCAGCGTGGCGGTGAACCCGCCGTACAGCCAGCAGATCGCACCCAACTACTACCCTTCGTCCTCCCCGGGTTTCAGCTCCAGCCAGCCGCGCATGTTCAGCATTAACACCCTCATTGGACACCACGGGGGTCTCTCCGGCGGGGCGGACCTCCTCCAGCAGCCCAGCCGCAGCTTTAGCCCGGACATGGCCTCCGCCGCCAGCTCCTGCAGCCTGGCCGGGACGGGCTATCAAGGCCAGTCGTGCGGAGGCGCCATGCTGTCCAGGTCGTCCAACCACATGTCCTTCCCTTACTCTGTGTCTAACGGACATCTGTCCATGAACCAGAGCTCCTACACCCAGGGGAACGGGCAGATCTATGGGACAGCGGGCCGACTGGCGATGCCCAGCTCTTCGCCCTCTGTGGCAAGTGACTCTATGGACCCCTATGGCAGGATGTCGCCGGGCCAGTTCACCACCTTGGCACAGTACAACAGCAATGGTCCCATCAGTGGCACAAATGCCTACCTGAGGCATGCTACCTATGCTGGCAACATGGACAGGTTTGTGTCTGCCATTTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003419 growth plate cartilage chondrocyte proliferation biological_process
GO:0060021 roof of mouth development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017946 True 696 mRNA 0.62 2 29953467 29954534

Neighbor

gene id symbol gene type direction distance location
AMCG00017943 LOC108276379,LOC100698524,LOC102195089,LOC102797997 coding upstream 41289 29902815 ~ 29912178 (+)
AMCG00017942 NA coding upstream 120104 29806640 ~ 29833363 (+)
AMCG00017941 NA coding upstream 188767 29757554 ~ 29764700 (+)
AMCG00017940 LOC106610258,LOC102204558 coding upstream 196552 29740934 ~ 29756915 (+)
AMCG00017936 NA coding upstream 536654 29368771 ~ 29416813 (+)
AMCG00017948 anp32b coding downstream 36112 29990646 ~ 30002319 (+)
AMCG00017953 NA coding downstream 112143 30066677 ~ 30089697 (+)
AMCG00017951 NA coding downstream 136432 30090966 ~ 30106897 (+)
AMCG00017950 LOC107748929,LOC102308595 coding downstream 187687 30142221 ~ 30146091 (+)
AMCG00017952 NA coding downstream 194809 30149343 ~ 30176032 (+)
G94310 NA non-coding upstream 302393 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 376064 29577156 ~ 29577403 (+)
G94260 NA non-coding upstream 630122 29322572 ~ 29323345 (+)
G94255 NA non-coding upstream 642614 29307100 ~ 29310853 (+)
G94245 NA non-coding upstream 666722 29286193 ~ 29286745 (+)
G94348 NA non-coding downstream 23619 29978153 ~ 29980642 (+)
G94505 NA non-coding downstream 584434 30538968 ~ 30544554 (+)
G94522 dcaf10,LOC102795877 non-coding downstream 631176 30585710 ~ 30591176 (+)
G94555 NA non-coding downstream 763644 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 1369990 31324524 ~ 31340832 (+)
G94275 NA other upstream 503120 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1306717 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2256088 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 2956015 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 4901093 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 865335 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 2452895 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 2506764 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 2553156 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2834907 32789441 ~ 32793604 (+)

Expression


Co-expression Network