AMCG00017951


Basic Information

Item Value
gene id AMCG00017951
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30090966 ~ 30106897 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017951
CTACTGAGGTGGCCCAAGACACTGTGCTCATGTTACTAAGGAACCCTGTGATTTTGAAACACAATCTAACTCATGGACACATGCCAGAGACTGCGTTCGGACTAGAACAACAATGATCCTTTCCAACCACATAATTCAGTCGGtcttctgttgctgttgttcaGTACAAAAACGAGAAATTACAACTCAGGTGAGCCTGGAGAATGACAATGGGTTGATTCGCACTCAACGCTTTCAAGAAACATATCATTCCAACAGATCCAGAAGGAAGCCGCCACCCCCACCACCAGAAGACAACGAGGCAAACAGCTTCTGTGTCATTGCGATGTACGACTTCTTAGCCAAAGAGGATTCTGATTTAACACTAAAGCACGGCCAAGAATATACCATACTTCATAAACAGGACCAGCACTGGTGGTTAGCTAGGGATGAACAGGGAAACCAAGGGTTCATTCCCAGTAATTATGTTACAGAGAAGGATAACATGGAGGCACACCAGTGGTACTGCAAGAACCTGACAAGACCGAAAGCAGAGCAACTTCTTCGCCAAGAGGGAAAGCAGGGTGCATTTGTTGTGAGAGACTCGAGCCAGCAGGGCTGCTACACTGTGTCAGTTTACACTAATGCACTGAGctcAGGTGAGGGGGACATCCGGCACTATCAGATAAAGAAGAATTGCTACGGACAGTTATTTTTGGCAGAAAAGCACGTTTTCAGTTCAATCCCAGAAGTAATTAATTATCATCAACACAACGCTGCAGGCCTCATCACAAGACTACGATATCCAGTTGGGCCAATGGGGAAATGTGTTCCAGCGACTGCAGGATTTAGCTATGAAAAATGGGAGATAAACCCGTCCGAGCTGTCCTTTATGAAGGAAGTTGGCAGTGGCCAGTTTGGAGTGGTGCGCTTGGGAAAGTGGCGGGCGCTTTGTAAAGTGGCCATCAAGACCATCAACGAGGGATCCATGTCTGAAGAAGATTTTATTGAAGAAGCCAAAGCGGCAAGAAACTGCCTAGTCAATGACAAGCATGTGGTGAAAGTATGTGACTTTGGAATGACAAGAAACCAGAGGGGAGACCTACTTTCTCTGAACTtctagaccaaattaaaaccacTGCGGAGATGGAATAGGATCAGACTTTTCAAATACACAAAGCATTAATGTGAACTGGGTTGTGACCCCATTGTGTTGGATGCAAATGGAAACGGAAACGAACTTTGAAATGGTACCGTTGCTTCTTGGCGGCAGAAGTTCCCAAGACCCGCGTCTATTCAGCAACTTACCTTTACCAGcaatttaaacaatgcaatggattttttgtataaaattgtataaactgtatataaatatatattttttacctttGTTATACTGTAAAAATTGTCTCCCAAATCATCGAGTAAGAACTCAAATGATCCATAATGGCATAAACACACTGGAAGTACTgagctgaaatacatttttcaacagaTATTTGAGAAACCCAGACAAAGACAATATACtgatatactatatatattttgaattttgtgtttaatcCCAAGGACCTAGGCTCACCTGCCAACTAAAACTCAGACCCAAGGCCTCTTTAATCTGTATTTCTACACAGACATTTCAAGACCAATCGAGATAATGTAATGGGTAGTGCAGACACAGACCCTTGCAGCTGCACAgggttttaaatggttttaattaagaaagCTTTTATCATAGATAGCCCATTGCTTTCCACTGACATCCCCTCCTACTCAACATTCTCCAAGGTTTATCTCCACAGCAGGCAACTTATGGCAGTATGAacatctattaaaaaataaaagaaaaagtaaggTATGAAATATATGCACATTTTGGATGAAATGGCAACAGCTGGAGAAGGTTTACTGATCCACCATCCTATCCTTACATATATCCAtcctttttaaagaaaacaatcctTCTGAGAGACATTTTAGGCATATATTGTacttacattaatttatttgtgtatttattttcaaaatggttttaaaattttaagtctgaataatctaaataaatgcaaatgtgaataatacaaatattaatacaatattttgatcAATGTAACAGTTTACTATACTGCAGTGCTTGGTAATTCCCACTGTCTTTTTGGTGCAtgctttaattgattaattgattgtgaTGGACAATGGCTTTTGGTCAGGGCTGTGCCCCACGTTGATTCAGAGCTGAAGTGAATACTCTAAGTGTGCATTTAGGCATTTACACCAGGCCCTTTTTATGACTAATCGCCATGCAGTAAAATTACATCTCTTCAGATTATCTCTGCCTACCATAGCTGTTCTAAGTGCCCATTTTTCAGCACATCAGAGTGGATAACAACGTAGGCTTCTCTCCTACCGCCTCATGTGGAGCATATCAGTGGTATTAGAGCCAGAATAAAGTGCCCCtgatttaatctgaaacaaaGGAAATACTCCCCCACCCTCTAGATCCATAGCCCATTTCTAAATCCCAGCCTCATCGATTGACAACCCTGATTGACAATCTTGGATTTCCTTCATTAGCACTGAAACAACTCCACCCACTTTATCAAGGTCCGCTGATGCTGAATAAACTGAGCTGTGCTGGGCAGGACGTCTGGGCTTCCAGATGCCTGCCTTGATTATACAACAGTGTTAGGTTCCGCTGTTATGTACGGTGGTATTGAATAATGATGCATATTTGACTCGATAAATGCATGGATGAACCAAACTGTACAGCTCACATGACAATGTCCCACTTCACAAATACTGTAATGGCAGGACTATAGCTAGATTGAGTTTTTATTAGAGGTCAGGATGCGCTTTAAAACATATTCCAAAAAAAAACCAAGAGAGGTACCCCTGGTGTTATACATGTAGACTTATTGTGTAAGGAAGAGGTTTGTACAATCTGAGTAGTATGTACACAATTGCATCAAAGGGAAAGAAAccacaacacaattataataaagaacGTCTGAG

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017951 True 2991 mRNA 0.41 12 30090966 30106897

Neighbor

gene id symbol gene type direction distance location
AMCG00017953 NA coding upstream 1269 30066677 ~ 30089697 (+)
AMCG00017948 anp32b coding upstream 88647 29990646 ~ 30002319 (+)
AMCG00017946 NA coding upstream 136432 29953467 ~ 29954534 (+)
AMCG00017943 LOC108276379,LOC100698524,LOC102195089,LOC102797997 coding upstream 178788 29902815 ~ 29912178 (+)
AMCG00017942 NA coding upstream 257603 29806640 ~ 29833363 (+)
AMCG00017950 LOC107748929,LOC102308595 coding downstream 35324 30142221 ~ 30146091 (+)
AMCG00017952 NA coding downstream 42446 30149343 ~ 30176032 (+)
AMCG00017956 LOC107748931 coding downstream 70734 30177631 ~ 30218286 (+)
AMCG00017958 NA coding downstream 183862 30290759 ~ 30291357 (+)
AMCG00017957 NA coding downstream 203168 30310065 ~ 30312005 (+)
G94348 NA non-coding upstream 110324 29978153 ~ 29980642 (+)
G94310 NA non-coding upstream 439892 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 513563 29577156 ~ 29577403 (+)
G94260 NA non-coding upstream 767621 29322572 ~ 29323345 (+)
G94255 NA non-coding upstream 780113 29307100 ~ 29310853 (+)
G94505 NA non-coding downstream 432071 30538968 ~ 30544554 (+)
G94522 dcaf10,LOC102795877 non-coding downstream 478813 30585710 ~ 30591176 (+)
G94555 NA non-coding downstream 611281 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 1217627 31324524 ~ 31340832 (+)
G94591 NA non-coding downstream 1288249 31395146 ~ 31395366 (+)
G94275 NA other upstream 640619 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1444216 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2393587 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 3093514 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 5038592 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 712972 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 2300532 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 2354401 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 2400793 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2682544 32789441 ~ 32793604 (+)

Expression


Co-expression Network