AMCG00017961 (UBE2D2,ube2d1,LOC105010898,LOC105015883,LOC105029919)


Basic Information

Item Value
gene id AMCG00017961
gene name UBE2D2,ube2d1,LOC105010898,LOC105015883,LOC105029919
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30456550 ~ 30459622 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017961
CTGAAGATGCCTAGTGCGGTATTTCCACCACTTTGTATGATATGCGGCGTGCTTGTGTTCAGTGAATTGGTGATACTGGACGTCAGTGTCTCATCTTGTTAAACCTCATTCTTgttcataatttgttttgtttaactctTGCAAAATGAGTTCTAGTCTACGGTGTTTAACAGGAATGAAATGGCTGCTGTTCATCTGCACCCTGGATTCTGACAGTCTTTACCTTCTTTTCCAGGAGCTGAACGATTTGGCACGTGACCCACCAGCACAGTGTTCAGCGGGTCCAGTCGGGGATGACAtgtttcATTGGCAAGCCACAATCATGGGACCTAATGACAGTCCATATCAGGGTGGTGTTTTCTTCTTGACAATTCATTTTCCCACAGACTACCCCTTCAAACCACCTAAGGTAAGCAGCACAACCATTTGCACACACCTGATGTGTCCagttgatattttgaaattcatcACTTAGTCTGTGGTAGTAGTGCTCCGCTGTAATACTGCTCTAGCCTCCAGTGCTGCAATTACCGTCTGTTTAATGTATTCTAGATAATGCCAAGAGCAAACCTGAGCAAGAGACAGGGTTTTACCATGGGATCATGCTTTTGTagaattacttatttattcatgtattttaattaaaatgagccTGTAGTAAGAATTAGGGGCATCAGGATGAATTTTAACCATTGTGCAGTATCCATTCAGCTTGAGGGGCTGAAACCTGCAGGATAGAACATTTTCAGTGCAACACTAATTGCTCGATTGCATTTATATTAGTGTGGACATGCTTATTGGATGTAGCATATTAAGAGGGCAAATTATTTGGCATggggttgaataattttgcCCTGCATATAGTTGCAGAGGAAATCAGTTTTTTCAGCACTGATCTTTATGCACCcctgtatttttcatttgtttgttcctTCAACTTTGACTTTTCCCCCCCTGAATGTTTTTAAGAGAATTGTGTgctatgaaaataaaaggattgtttttattttccaggttGCATTTACCACAAGAATTTATCACCCAAATATTAACAGTAATGGCAGCATCTGCCTTGATATTCTAAGATCACAGTGGTCTCCTGCGTTAACTATTTCTAAAGGTAAGGGCTTTGTTTGGAAAGCCTTGATTTTTCTCTAAGCAAATATTAAATGTCTATGCATTGCTTTCTCAAAATTGCATCCTTCATAAATACCAGcaacaaaatacttttatgtAAGTAAATAACAGCCTTGGTATGTAAATGTGTGCGTTTAAATTGTTCCCAGGAGGGAAATGAATTGCCAAGCCTATGAATTTGACCGTTCACCTCAAAAGTAACAATATATCCACAGATagcagtaaaaatacaataactgttAATACAGGAGTGAAGAGAGCAGTAGCTGGTTTATTTCTTCTGGAAGTGTTTACCAAATTTGTGCTTTTATTgcttttgaatgtattaaatggCTACACTTAAACCGTGACGATTGCTTATTTGTGATGGTTTAATTTCCTGTGATTGTCTCGCTCTGCTGTATTCGGAAGGAAGGGGTTACAGTCAAAGTGGCTCCTGTGGTGTCATTCAGCATGCCCGATTTTAAAAGCGTTGATTTTTCTTGTGTACCTCCTGATGGAACAGGTTTTTAATGCTGAACTTCTTCTGTTACAGTTCTTTTGTCCATTTGTTCACTGTTATGTGATCCAAACCCAGATGACCCTCTAGTGCCAGAGATCGCACGCATCTACAAAACAGATAGGGAAAAGTGAGTATGCATCCACCGCCTGGGCCCTTCAATTCGTGCAGTTTCAATTGTCctacaaatgttaaaaactaACTAGTCTCAACTGCTAGATGTTGACGAGCATAAACACTTGATTCTCCAGGTAACGTGGCACCATTTTGCTTTATTAGGTATAATAGACTAGCGAGGGAATGGACAGAGAAATATGCAATGCTTTAGGGTAAGATCCCCGGCATCTTGGAGTGAGCAGGACCGTTTGCACTGAAGTGTTGCATGAGGACCACACTGCTGCTGTGAACTAACTAATGGAGCTGAGGCACTCTGGCCTGTGATGGATTAACTGCTTGGAGATGCAGGGTTGTGCTGTTTGTTTGATAAGGAGGCTTAAGCAAAAATCTATTTCAATATTGGTTTTGAGGAAACAGTGTAAAATCTCTTGTACGTTTCGAAGCACTGTACTCGTAGACATGTTCTGCCACCCTGAGTTCATCCCTTTTGTGTTCCCGATGttacaaattcagaaaaacCTGATGTGACAATTTGATTTCACTTCCCGATTGATCAGCAAATGTTATACATTTAGTGTGGTGTTCATGTTCCATGAGTATACGGTAACGGATTGTCCTTTGCACAAAGTAgcccaaccaaaacaaaacagacccTTTTCATGAAGATCGGAGATGCTGGCACAACTGTTCTCACAATTCAGTTTAGGGGCCGTGTGTCCTGATCAGCCACAGGCTTGCTGGTGTGTGCAAAGTGAACGAGTTGTCAGCAGGTCAGAGACTAAATATTTGTGTTAagtgttaaatgttaaacttttAGTTTTGGAATCTCAAAGGCATTGATGAAACCATAATGCACGGATATTTAGTTGCATATCAAAATGTTTAAGCTTATAACTAATTCAGAATCTGGAATTGCTCAGTTACGCTTTGTGATTTTAGACCTTTTAAAATGAGCCAGACCTCAGGACATCAGTGTCCTCATGACAGGGTGGGGTTGGGGTAACTGTGGTGTGTTGTGGCCGTGGGTTAATTTTACTTGTACTTAAGTTAAATGTAAGGATTGAGATGCTATAATACGAGCACTCGCTCATTCCACACCTCTTTCAGCCCTAAAAAAGCACAGAGGCCTGGTG

Function

symbol description
ube2d2 Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be active in nucleus. Orthologous to several human genes including UBE2D2 (ubiquitin conjugating enzyme E2 D2).
ube2d1 Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase activity. Involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytoplasm. Part of ubiquitin ligase complex.

NR:

description
ubiquitin-conjugating enzyme E2 D2 isoform 1

GO:

id name namespace
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0035666 TRIF-dependent toll-like receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0034138 toll-like receptor 3 signaling pathway biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017961 True 2886 mRNA 0.40 3 30456550 30459622

Neighbor

gene id symbol gene type direction distance location
AMCG00017959 NA coding upstream 26927 30415761 ~ 30429623 (+)
AMCG00017962 NA coding upstream 45062 30401589 ~ 30411488 (+)
AMCG00017957 NA coding upstream 144545 30310065 ~ 30312005 (+)
AMCG00017958 NA coding upstream 165193 30290759 ~ 30291357 (+)
AMCG00017956 LOC107748931 coding upstream 238264 30177631 ~ 30218286 (+)
AMCG00017960 NA coding downstream 3242 30462864 ~ 30487284 (+)
AMCG00017964 NA coding downstream 61013 30520635 ~ 30537464 (+)
AMCG00017970 NA coding downstream 137374 30596996 ~ 30604243 (+)
AMCG00017969 NA coding downstream 151428 30611050 ~ 30614334 (+)
AMCG00017968 LOC106604549 coding downstream 161201 30620823 ~ 30631235 (+)
G94348 NA non-coding upstream 475908 29978153 ~ 29980642 (+)
G94310 NA non-coding upstream 805476 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 879147 29577156 ~ 29577403 (+)
G94260 NA non-coding upstream 1133205 29322572 ~ 29323345 (+)
G94255 NA non-coding upstream 1145697 29307100 ~ 29310853 (+)
G94505 NA non-coding downstream 79346 30538968 ~ 30544554 (+)
G94522 dcaf10,LOC102795877 non-coding downstream 126088 30585710 ~ 30591176 (+)
G94555 NA non-coding downstream 258556 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 864902 31324524 ~ 31340832 (+)
G94591 NA non-coding downstream 935524 31395146 ~ 31395366 (+)
G94275 NA other upstream 1006203 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1809800 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2759171 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 3459098 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 5404176 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 360247 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 1947807 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 2001676 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 2048068 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2329819 32789441 ~ 32793604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_02496792_02498535 NA coding CI01000000 null 2496744 ~ 2498594 (+)