AMCG00017966 (nfkb1)


Basic Information

Item Value
gene id AMCG00017966
gene name nfkb1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30491226 ~ 30514195 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017966
ATGGCTGAAGAAGACGCTTACCTGCCCGGTCCTGGTATTTTCGACATGGATGTGTTTCCCCCTATATTAGGAATGGATCCTTTTACTTTTACCCCCATGTCGTCTACGCCCTCTCTGAGAATAGccgACGGACCCTACCTTCAAATCATAGAACAACCAAAACAGAGGGGCTTCCGATTCCGTTATGGCTGTGAAGGTCCCTCCCACGGGGGTCTACCCGGAGCATCGAGCGAAAAGAACAGGAAATCCTATCCACAGGTCAAGATCAACAACTATCAGGGGCCGGCCAAGATTGTGGTGCAGCTGGTGACCTACTCCAAGAACGTCAACCTCCACGCTCACAGTCTGGTGGGGAAGCAGTGTGACAAGGGCATCTGCATTGCCGACCTGCAGCCCAAAGACAGCAGCATCAGTTTTCCGAACTTGGGGATTCTTCACGTCACTAAAAAGAACGTCAGCAAAACCTTGGAAGAGAGGATGACCGAGGCATGCAGGATGGGCTATAACTACAGGATCACAATCCACCCAGATATAGACTGCCATCAGAATGAGGGACAGATACCCAGAGAACTCACAGAGCACGAGAAGAGCCTCATAGCAAGTGCAGCCATTAACCAGGCCAAGGAGATGGACCTGAGTGTGGTACGTCTGATGTTCACCGCCTTCCTGCCCGACAGCGATGGGGGCTTTAGTCGCCGACTGGAGCCGGTCATCTCGGATCCCATTTACGACAGCAAAGCCCCCAATGCCTCCAATTTAAAGATCGTGAGGATGGACCGCACGGCGGGGTGTGTCACGGGGGGAGAAGAGGTTTATCTCCTGTGTGACAAGGTGCAGAAAGACGATATCCAGGTTCGCTTCTACGAGGACGATGAGACGGGTCTGGCCTGGGAGGCTTTTGGTGACTTCTCACCCACAGACGTCCACAGGCAGTTTGCGATCGTCTTCAAGACGCCAAAGTACAAGGACCTCAACTTACAGAAGCCGACGTCGGTGTTTGTGCAGCTGAAGAGGAAGTCTGACAACGAGACCAGCGAGCCCAAGCCTTTCACATACCACCCGCAGGTCATAGACAAGGAGGAGGTGCAACGCAAAAGGCAGAAGACCTTGCCCAACCTCCAGGACTATGGCCCTGGGTCTGGGTCAGGAGGGGGGATGTACAGAGGAGGAGGGACTGGTGGGGGTCCCGGCACTGGAGGAGGTCAATATAATTTCCCAGGATACACAAACTATAACAACTTTGGAAGCGGGTATTCGTACTCCCATGGCCAGCCTGGTCCGGGAACTGGCATGAAGCACGaCCTGCTTTTCGGGGAGAAGGCCCTGCAGCTGGCGCAGGTTCACACAGAGGCCCTGTTCAACTATGCTGTCACGGGGGACGTGAAGATGCTGTTGGCGGTGCACCGCCCACTCATGGCAGTGCAGGACGAGAACGGAGACACAGGCCTGCACCTCGGTGTGATCCACAGCCGGACTGACACGGTGAAGGGCCTGGCTGAGGTTATATCTGCTCTGCCGGGGGAAGATGTTGTGAACATGAGGAACGACCTCTATCAGACACCTTTACACTTGGCGGTCATCACCAGGCAGGCGGACGCAGTGGAAGCCCTGATCCAGGCTGGCGCAGATGTCAGTCTAACAGACCGCCACGGAAACACGGCTCTTCACCTCGCGGCTAAAGAAGGCGAAGGGAGGATCGTGGGCCTGTTGCTCCGGCACAAGGAGGCAGCAAAACTGATCAACCTGCCCAACGCTGCGGGCTTCTGTGCTATCCACTTGGCTGTGCTGGCCAACAGCCTGTCGGCCCTCAGGGAGCTGCTGGAGTGCGGGGTGGACGTGGACAGCTGTGAGCTGAGCTGCGGGAGGACCGCCCTGCACCTGGCCGTGGAGCTGGAGAACATCTCGTTGGCCGGCTGCCTTCTTCTGGAGGGCAACGCCCATGTGGACGCCTGTACGTACGATGGATCCACGCCGCTCCACATCGCGGCTGGGCGGGGCTCGGTGAAGCTGACCGCTCTGCTCATGGCAGCTGGCGCCGACGCGCATAAGGAGAACTTCGAGCCGCTGTACAACTTGGAGGAGGAAGGCTACGCGGAGGTagaggaggaggacgacgagGGGTTCATTCCCGGGACCACACCTTTAGACATGGCTGTGTCTGCagagATCTATGACATTCTGAACGGCAAACAATACCAACCAGATTCAAAATATGCCACCATGCTTCCTCCAGGGGATATGAAGAACCTGGGTGAAGAAACCAAACGGGAGCTCTGCACAGTCCTGGAGCGGCCCGCGGGCAACTGGGAGATCCTGGCCCAGAGGCTGGGGCTGGGAATCCTGAATGGTGCCTTCCGACTGAGTCCCTCGCCAGCCAAGACCCTGCTGGACAGCTACGAGGTGCCACCCTTGCCCTTTACTTCATGGGCTCTCTAG

Function

symbol description
nfkb1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); common variable immunodeficiency; melanoma; prostate cancer; and tropical spastic paraparesis. Orthologous to several human genes including BICDL1 (BICD family like cargo adaptor 1).

NR:

description
PREDICTED: nuclear factor NF-kappa-B p105 subunit

GO: NA

KEGG:

id description
K02580 NFKB1; nuclear factor NF-kappa-B p105 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017966 True 2436 mRNA 0.57 20 30491226 30514195

Neighbor

gene id symbol gene type direction distance location
AMCG00017967 NA coding downstream 398 30489476 ~ 30490828 (-)
AMCG00017963 cisd2,LOC106602754 coding downstream 51617 30432203 ~ 30439609 (-)
AMCG00017954 NA coding downstream 361912 30121865 ~ 30129314 (-)
AMCG00017955 NA coding downstream 378262 30112290 ~ 30112964 (-)
AMCG00017949 NA coding downstream 460702 30011310 ~ 30030524 (-)
AMCG00017965 LOC107749781 coding upstream 24773 30538968 ~ 30580996 (-)
AMCG00017971 NA coding upstream 91318 30605513 ~ 30607128 (-)
AMCG00017977 NA coding upstream 144431 30658626 ~ 30722050 (-)
AMCG00017976 pigg coding upstream 230776 30744971 ~ 30776441 (-)
AMCG00017974 pigg coding upstream 296209 30810404 ~ 30811335 (-)
G94483 NA non-coding downstream 30053 30456198 ~ 30461173 (-)
G94482 NA non-coding downstream 30338 30459549 ~ 30460888 (-)
G94392 NA non-coding downstream 382044 30108971 ~ 30109182 (-)
G94359 NA non-coding downstream 488944 29998354 ~ 30002282 (-)
G94358 NA non-coding downstream 493713 29996249 ~ 29997513 (-)
G94533 NA non-coding upstream 96626 30610821 ~ 30614319 (-)
G94563 NA non-coding upstream 204157 30718352 ~ 30721502 (-)
G94577 NA non-coding upstream 465700 30979895 ~ 30980552 (-)
G94590 NA non-coding upstream 865060 31379255 ~ 31380225 (-)
G94598 NA non-coding upstream 943684 31457879 ~ 31458254 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 1218058 29269235 ~ 29273168 (-)
G94172 NA other downstream 1615303 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 2346637 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 2651436 27838251 ~ 27839790 (-)
G93796 NA other downstream 4381152 26109060 ~ 26110074 (-)
AMCG00017972 dcaf10 other upstream 71534 30585729 ~ 30596417 (-)
G94543 NA other upstream 113793 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 1745512 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 1757499 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 1771290 32285485 ~ 32308080 (-)

Expression


Co-expression Network