AMCG00017968 (LOC106604549)


Basic Information

Item Value
gene id AMCG00017968
gene name LOC106604549
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30620823 ~ 30631235 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017968
TCTGGTTCGGCGGGATTGGATTGGTTGGAAGTTGCGGAAGTGACGCCACGCCGCGCCACAGTTCCACATCCGGGTGCGGCGCTCAATCTGCATCCCAGGAGAAGCGAAAGGGAGAAAGTTACATCCTTCACAATGTCGGGCTTGGAAGAAATCCCGAAACTGAGCCTGGAGGCGCAGCAGGACCAGAGCGGCGAGGCCGAGGCGGCGGAGGAGCCCGAGTGTGACTACGGGGATGAGCTCGGCGCAGGGGGCTACGTCTTCTACAGGGACAGGAAGGAGTGGGCCGACGTTGAGCCAGTACCTCAAGACGACGGCCCCAACCCCATCGTGAAGATCGCCTACTCTGACAAGTTTACAGATGTGTACGATTACTTCCGAGCCGTGCTGAAGCGGGACGAGAGGAGCGAAAGAGCTTTCGCGCTGACTGCCGATGCCATAGAGCTCAACGCTGCCAATTACACCGTATGGCATTATCGCAGAGTCCTCCTACAGTCCTTGAAGCTGGACCTGATCGAAGAGATGAAGTACATCACAGCCATCATCGAGGACCAGCCGAAGAACTACCAAGTGTGGCACCACAGGTGGATGGTGGTGGAGTGGCTGAAGGATCCTTCTAAAGAACTGGAGTTCATTGCTGATATTCTCAGCCAGGACGCCAAGAACTACCACGCCTGGCAGCACCGGCAGTGGGTTATTCAGGAGTACAAGCTGTGGGACGACGAGCTGGAGTACGTGGAACAGTTGCTGGAGGAAGATGTGAGAAATAATTCGGCCTGGAACCAGAGGCACTTTGTCATCTCCCACACCACTGGCTACAGCGACGCGGCCGTGCTGGAGAGAGAAGTGCGGTACAGTCTGCAGCTGATCAGAAAGGCTCCGCACAACGAGAGCGCCTGGAACTATTTGAAAGGAATATTGCAGGACCGAGGCCTCTCGACGTTCCCCGGCTTGCTTGAGCAGGTCCTGGAGCTCCAGAAGACGCACAGCTCACCCTATCTCATCGCCTTCCTCGTGGACCTGTATGAAGACATGATGGAGAACGCCTGCAAGGACCAGGAGGAGATCTTAAACAAGGCGCTGGAGCTCTGTGAACTCCTGGCGAAGGAGAAGGACAGCATCAGGAGAGAATACTGGAGATACATCGGCAGGTCTCTCAAGGCCAAGTTCGGCTCCAGCGAGGCGTCGGCGGGCCCTACAGAAGAGCGAGAGACGTGTGGGAACGCCTGAGGAGATCTGTGGGCTTGGAGGAGAGAGGGCTCTCCGCGAGGAACATTGTCTAGATTTCTACAGCCGCGGCTGACCGTTACCACATTGGTAACGAGTTTATTTACTGGCAGTGCTAGTAGTGGGCATCGAGTTTTCAAGTAAAAATGCTGACATTTAAATTTGAGTCAACGAATGGTTTCCATGAGGCGGCCGCCAAGTACCTCCGGTCACAGGAGCAACTAAACACTCTACTGTACtaaactgatattttaaaatctttgccAAAACATTGTGTAACCATGCTCTGCGTTGCTTAGACTATAATGTCTTTTGTACGCtagaattaataatataattatacc

Function

NR:

description
PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like isoform X2

GO: NA

KEGG:

id description
K05955 FNTA; protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017968 True 1568 mRNA 0.54 9 30620823 30631235

Neighbor

gene id symbol gene type direction distance location
AMCG00017969 NA coding upstream 6489 30611050 ~ 30614334 (+)
AMCG00017970 NA coding upstream 16580 30596996 ~ 30604243 (+)
AMCG00017964 NA coding upstream 83359 30520635 ~ 30537464 (+)
AMCG00017960 NA coding upstream 133539 30462864 ~ 30487284 (+)
AMCG00017961 UBE2D2,ube2d1,LOC105010898,LOC105015883,LOC105029919 coding upstream 161201 30456550 ~ 30459622 (+)
AMCG00017973 NA coding downstream 24898 30656133 ~ 30656924 (+)
AMCG00017980 ampm1,metap1,LOC107556924,LOC107733733,LOC106600494,LOC107695030 coding downstream 977983 31609218 ~ 31621106 (+)
AMCG00017982 NA coding downstream 1014590 31645825 ~ 31649592 (+)
AMCG00017981 NA coding downstream 1028666 31659901 ~ 31675037 (+)
AMCG00017985 NA coding downstream 1109333 31740568 ~ 31745981 (+)
G94522 dcaf10,LOC102795877 non-coding upstream 29647 30585710 ~ 30591176 (+)
G94505 NA non-coding upstream 76269 30538968 ~ 30544554 (+)
G94348 NA non-coding upstream 640181 29978153 ~ 29980642 (+)
G94310 NA non-coding upstream 969749 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 1043420 29577156 ~ 29577403 (+)
G94555 NA non-coding downstream 86943 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 693289 31324524 ~ 31340832 (+)
G94591 NA non-coding downstream 763911 31395146 ~ 31395366 (+)
G94594 NA non-coding downstream 786614 31417849 ~ 31418120 (+)
G94599 NA non-coding downstream 885593 31516828 ~ 31517029 (+)
G94275 NA other upstream 1170476 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1974073 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2923444 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 3623371 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 5568449 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 188634 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 1776194 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 1830063 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 1876455 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2158206 32789441 ~ 32793604 (+)

Expression


Co-expression Network