AMCG00017969


Basic Information

Item Value
gene id AMCG00017969
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30611050 ~ 30614334 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017969
TTAACTGCGGTCGAAAACGAGAAGTAAGTTGTGCTCGCcgctgttttgatttaattaacacaGCCAGTTAATGGGGAATTGTAATGCTCTTTTGCATTCATAATTTCTATTCAGActcttaataaatatatatatatgcatatatatgcatgttCATTTTTGAACTTTCTTTAGACGTAAGGAAGTGTTCGTGCATAACTTAAATCGAGGGCGTCTGTGAAACTGCATCAATTTTAAGTGTATAACCAAGTTGTTGCAGGGATTGAGTATTTTCCCACTGTAGGCTTGAAGCCACTTGCAGGTAACCAGGTGCCACCTGTTATTCAAGGGTTTATCTAGATTGCATGTCTGCGAATCCGTTACGGTGAATAATCCGTTTCGCTTCTTGGACTAGCCGCCTGGTTGCATAACTGACCCAGTTTTGGGATCATTGTTCTGCCGTCACAAAGCGCGATGTTGTTGATGGCAATTAAAGTGCAGCGCAACCCTGGAGCCTGCAGCCTGGCACTGCGGCCCGTTACCCTGCTGTATGGTCTTGCTTTGAAGACCAGTTAAAGCCGCGACTGAAATTTAAAGTGCCATTTTTTAAGGGGGGTGGCTTTCAGGAAGCTGGAAAGCCATTCAGACCAGTTGCAATACAAGCTCTGACCTAATCTGGGATTTAAAATGGGACCCAAGGAAATCTGCACAATTAGGTTAAAGTTAATTTGTCTTTGGTGCCTTGGGCAATTGTTTTGGCAACTTTTAGACTTGTCCTTGCATCTGAGGTTACAAAGTGAAATCCTGTGTTGTAATCCTGTGTCCTAGAAATGCCacatgaatgttgttttttgtgaaattaGCCTAGATTTCACAAATTGCTTAAACTTCGTTGCAGACAACGGGTTGCTGGCTGGTTTTTCAGTCTCTCGTGTACACTGACCTGTACTGATGCTACAGCAAATTGCCTCCTGCAGCTCAATGTTCAATTCTCTGCTCACTAATGTTTCTGTTCCTCTTATTTCAGTGTCGTCCTACACCCTCACGTACTTCCCTGTTCGAGGGCTCGGTGAGGCCATGAGGAGTCTCCTGGCAGACCAAGGCCTGGACTGGAAGGAGAATGAAGTGAACTTTGAAATGTGGACCAAGGGAGATCTGAAAGCAAGCTGTGTGTTTGGCCAGTTGCCGAAATTTCAAGATGGAGGGTTCACCCTTTACCAGTCCAATGCTATACTGAGATATCTGGGACGTAAACATGGACTTTATGGAAAGAATGACGAGGAGAAGGCTCTCATTGATATGGTGAATGATGGCGTTCATGACCTCCGACTCAAATATGTCAAACTGATCTACCAGGAGTATGACACTGGTAAAGACAAGTATATCAAGGACCTGCCTGATGACCTTGCCAAGTTTGAGAAGATCCTGTTAAACAATAAGGGAGGCTTTGTAGTAGGCGATAAGATTTCTTTTGCTGACTACAACCTCCTGGATGTGCTGAGAAATCACCTGGTTCTGGCCCCCACCTGCCTGGATAAGCTTCCAACTTTGAAGAGCTATGTGGAGCGGCTGAATTCTCGCCCTAAATTAAAGGCCTTCCTGGAGTCTGATGCGCACAAGAACCGTCCCATCAACGGCAATGGCAAGCAGTGATGTGCTagctgcagaaatccactgaccTGTGACTACCAATTGCTATCTGTAGAGCAGACCACTTTGTGAAATGCTTGTGAAGTCtctccttttgttttgaaatcagtTCAATTTTGTACTTGGTTAGTTTCTAATAAAATGACTTGCTGAGAGATGTGGGCTCTACTGA

Function

GO: NA

KEGG:

id description
K23790 GSTP; glutathione S-transferase P

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017969 True 1801 mRNA 0.44 6 30611050 30614334

Neighbor

gene id symbol gene type direction distance location
AMCG00017970 NA coding upstream 6807 30596996 ~ 30604243 (+)
AMCG00017964 NA coding upstream 73586 30520635 ~ 30537464 (+)
AMCG00017960 NA coding upstream 123766 30462864 ~ 30487284 (+)
AMCG00017961 UBE2D2,ube2d1,LOC105010898,LOC105015883,LOC105029919 coding upstream 151428 30456550 ~ 30459622 (+)
AMCG00017959 NA coding upstream 181427 30415761 ~ 30429623 (+)
AMCG00017968 LOC106604549 coding downstream 6489 30620823 ~ 30631235 (+)
AMCG00017973 NA coding downstream 41799 30656133 ~ 30656924 (+)
AMCG00017980 ampm1,metap1,LOC107556924,LOC107733733,LOC106600494,LOC107695030 coding downstream 994884 31609218 ~ 31621106 (+)
AMCG00017982 NA coding downstream 1031491 31645825 ~ 31649592 (+)
AMCG00017981 NA coding downstream 1045567 31659901 ~ 31675037 (+)
G94522 dcaf10,LOC102795877 non-coding upstream 19874 30585710 ~ 30591176 (+)
G94505 NA non-coding upstream 66496 30538968 ~ 30544554 (+)
G94348 NA non-coding upstream 630408 29978153 ~ 29980642 (+)
G94310 NA non-coding upstream 959976 29650790 ~ 29651074 (+)
G94308 bnc2,LOC106936717,LOC106933596,LOC107595060 non-coding upstream 1033647 29577156 ~ 29577403 (+)
G94555 NA non-coding downstream 103844 30718178 ~ 30722318 (+)
G94583 NA non-coding downstream 710190 31324524 ~ 31340832 (+)
G94591 NA non-coding downstream 780812 31395146 ~ 31395366 (+)
G94594 NA non-coding downstream 803515 31417849 ~ 31418120 (+)
G94599 NA non-coding downstream 902494 31516828 ~ 31517029 (+)
G94275 NA other upstream 1160703 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 1964300 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 2913671 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 3613598 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 5558676 25050309 ~ 25052374 (+)
AMCG00017978 NA other downstream 205535 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 1793095 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 1846964 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 1893356 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 2175107 32789441 ~ 32793604 (+)

Expression


Co-expression Network