Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00017971 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 30605513 ~ 30607128 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0046835 | carbohydrate phosphorylation | biological_process |
| GO:0006493 | protein O-linked glycosylation | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0044425 | obsolete membrane part | cellular_component |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| K17547 | SGK196; glycoprotein-mannosyl O6-kinase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00017971 | True | 1041 | mRNA | 0.62 | 2 | 30605513 | 30607128 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017965 | LOC107749781 | coding | downstream | 24517 | 30538968 ~ 30580996 (-) |
| AMCG00017966 | nfkb1 | coding | downstream | 91318 | 30491226 ~ 30514195 (-) |
| AMCG00017967 | NA | coding | downstream | 114685 | 30489476 ~ 30490828 (-) |
| AMCG00017963 | cisd2,LOC106602754 | coding | downstream | 165904 | 30432203 ~ 30439609 (-) |
| AMCG00017954 | NA | coding | downstream | 476199 | 30121865 ~ 30129314 (-) |
| AMCG00017977 | NA | coding | upstream | 51498 | 30658626 ~ 30722050 (-) |
| AMCG00017976 | pigg | coding | upstream | 137843 | 30744971 ~ 30776441 (-) |
| AMCG00017974 | pigg | coding | upstream | 203276 | 30810404 ~ 30811335 (-) |
| AMCG00017975 | clg15h9orf72,LOC103354026 | coding | upstream | 225665 | 30832793 ~ 30848229 (-) |
| AMCG00017979 | NA | coding | upstream | 373922 | 30981050 ~ 30982903 (-) |
| G94483 | NA | non-coding | downstream | 144340 | 30456198 ~ 30461173 (-) |
| G94482 | NA | non-coding | downstream | 144625 | 30459549 ~ 30460888 (-) |
| G94392 | NA | non-coding | downstream | 496331 | 30108971 ~ 30109182 (-) |
| G94359 | NA | non-coding | downstream | 603231 | 29998354 ~ 30002282 (-) |
| G94358 | NA | non-coding | downstream | 608000 | 29996249 ~ 29997513 (-) |
| G94533 | NA | non-coding | upstream | 3693 | 30610821 ~ 30614319 (-) |
| G94563 | NA | non-coding | upstream | 111224 | 30718352 ~ 30721502 (-) |
| G94577 | NA | non-coding | upstream | 372767 | 30979895 ~ 30980552 (-) |
| G94590 | NA | non-coding | upstream | 772127 | 31379255 ~ 31380225 (-) |
| G94598 | NA | non-coding | upstream | 850751 | 31457879 ~ 31458254 (-) |
| AMCG00017972 | dcaf10 | other | downstream | 9096 | 30585729 ~ 30596417 (-) |
| G94238 | pla2g12a,LOC108263807,LOC102792247 | other | downstream | 1332345 | 29269235 ~ 29273168 (-) |
| G94172 | NA | other | downstream | 1729590 | 28874161 ~ 28875923 (-) |
| AMCG00017906 | elavl2 | other | downstream | 2460924 | 28098905 ~ 28144589 (-) |
| AMCG00017902 | NA | other | downstream | 2765723 | 27838251 ~ 27839790 (-) |
| G94543 | NA | other | upstream | 20860 | 30627988 ~ 30658493 (-) |
| AMCG00018000 | slc1a1 | other | upstream | 1652579 | 32259707 ~ 32263865 (-) |
| AMCG00018004 | NA | other | upstream | 1664566 | 32271694 ~ 32276372 (-) |
| AMCG00018007 | NA | other | upstream | 1678357 | 32285485 ~ 32308080 (-) |
| G94835 | NA | other | upstream | 1847957 | 32455085 ~ 32456410 (-) |
