AMCG00017972 (dcaf10)


Basic Information

Item Value
gene id AMCG00017972
gene name dcaf10
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 30585729 ~ 30596417 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017972
GAAACACGTCACGGCGCCGGGGCTTGTTTTGCGTGTGCAGCGCCGGACTGCGCCGGTTCTGGGATCCCTCGTAATGCCAAGCCCGGGCTCGCCATCGCTTTCATCCGGCTAGACAGAGGGGACAGCCGGGGAAAGCTGGCGACACGTCCTCTATCCCTCAGCACGTCGACTCGAAGACGACCCGACCATGAGCTCAGATCGGCAGAGCGACAGCGAAGACGGCGAGGAGTCCCCGGTAGGCAGGCCCAGTCGTGGAGCTCCTGCGAGGAAAGGCccggaggaggaggatgatgCGGATGCACGGCGGCAGAGGAGGCACCAGCGAGCCTCCGGCCACAGGGACGGTTCCGAAACGGCGGCGGAGGAGCTCCCCTCGGACCCGGCGAGCGCTTCGTGCTCCAGGACGGTCGGGTTAACCACCAGCGGCGGGAATACCATATTCCGGTGGCTGCGGGAGAGGTGTCTGGGTAGGGGGGTGTTTGTGGACCCTGCTCGGGACAACTTCAGGACCATGACGAGCTTGTACAGCTCCATGAACCCGGCGGACTCCGTCAACCTGAGCACGAAGACGCACGGCGCCGTGTTCAACCTGGAGTATTCGCCCGATGGGTCTGTGCTCACTGTGGCTTGTGAGCAAACTGAAGTCCTCTTATTTGACCCGATATCCTCGCGGCACATCAAGACTTTGGTTGAGGCACACGAGGACTGTGTTAACAACATCAGGTTTCTGGATAACCGCCTCTTTGCCACCTGCTCAGATGACACCACCATCGCCCTCTGGGACCTGAGGAACCTCAACTCCAAAGTGTGCTCTCTGCACGGACACGCCAGCTGGGTTAAGAACATCGAGTACGACACCAACACCAGGCTGCTCGTCACGTCAGGGTTCGACGGCAACGTCATCACGTGGGACACGAACCGGTTCACGGAAGACGGCTGTCCGCACAAGAAGTTCTTTCACACCCGCTACCTGATGAGGATGCGTCTGACGCCGGACTGCTCCAAGATGCTCATTTCCACCTCGTCCGGGTATCTGCTGATCCTCCACGACCTCGACCTGACGCAGTCCCTGGACGTGGGGAGCTACCGCATCCTGAGGGCCAGGCGGACCACCTTGAGCTCAGATAACTCCACATCGGGTCAGCGATCCTCTGGCTCTCCTCGGCACAACGAATCCATCAAAATCCCCTCTCACGCTCAGAGGGAAGGAGCGTCTCCTCGAAACAGCCTGGAGGTGCTGACCCCTGAGATCCCGGGGGAGAGGGACCGGGGCAACTGCATCACCTCCCTGCAGCTGCACCCCAAGGGCTGGGCCACCCTCATCCGCTGCTCCAGCAACACGGACGACCAGGAGTGGACGTGTGTGTACGAGTTCCAGGAGGGCGGCCCCGTGCGGCCCGTGTCGCCCCGCTGCTCCCTGAAGCTCACCCACTACATCGAGGAGGCCAACGTGGGCCGGGGCTACATCAAGGAACTGTGCTTCAGCCCCGACGGGCGCCTCATCTGCTCGCCCTACGGCTACGGCATCCGGCTGATGGCCTTCGACGGGCAGTGCAGCGAGCTGGTGGACTGCCTGCCCAAGGAGTCCAGCTGCCTGCGCGAGATCCGCTCCATCTACTCGCACAGCGACGTGGTGCTCACCACCAAGTTCTCGCCCACGCACTGCCAGCTGGCCTCCGGGTGCCTTAGTGGACGGGTGTCCCTCTACCAGCCAAAGTTCTAGCCACTACTCGACCCTcccggacacacacacacacacacacacacacacgcatgtaaTTCCTCCCACCGCAAGAGGTAGATGCGTGCATCTGATTTGTTGACTCCCAGAGAGGTGCAAGAGGATATCATCTACCTTCAGAGGCCTCCCGGGAGCCCAGGAGCCGCCCCCAAAGGTTAATTAAAGAGTGTTTAAGCCCACAGAAGAGGGACAGAGCGGTAATCTCTGCGACTCAACTCTGGTGTACAGCTGCGGACTGGTACTCGTATTTGTCTACAGTAAATATATGctatttttgattgttttggtttgtttgtttgtttgtttgtttgtttcaaccTGTTCACCATCTTCTGTGGTACTTTGTGTATGTattcgttgtttttttttctggagaaTACAGAGAACCCTCATCCCTGCCTCTGTAGCTTTTGAGACTTTTTCTTTGTACACTACAGTGCAGTCATGTCCACAGCCAGAAGGAGGAAGATTAGAGACCGTTTGTTTAATCGGTCGTGCCCCTTGCAGATTTTCTTATCTCTGGCTTTCTGCAGGAATTCAGTTACTCCGTCCTTGCCGGTTGGGCtggctctcacacacacactaacacagagaGTCAGTTTACTATTGCAAATTCAATCCTAGTCTTTTACTTTCTTCTGTCCGTTTTCTAGTGTTCTTGTTATACAAACACAACGTTTAACAGACATGagctgttttacttttttgtcttttgcatgttttttttcttatgcatGAACTGGTCCAAGATTATTATATTCCATGAGACATTTTTATCCATGAAGGATTTGTAGAATTGAAGGTTTTCATGAACGATAAAGAGTGAATCTCCCCCTGAAGACGGTGAAACAGTAAAggttatttgaaatatttaaatactggtTTTGACATCCATGCCTTTACGGTTTCCGAGTTTGTCTTTGGCCAGGAACCACTATCGCAGATTCCTGGTGatttttgtgttggtttatACAATGTTTGAGTTGGCGTTTCAGGGTCAGTGTCCTGAGACCTTAATGAAGCACTGTCAGCATAGCATTTATTTTGGTTCTTTTATCTTCAGCTCAAAAGTTGACACACAAGGaggttttacacacacaagGCAATGCAAGATGTGTTTATTCTGGAACTATGCTTAGCATTGGCAGAATTCAAGTGGGGTCTCCCTTGCCTTGCTTACACATCGTTCAGGAGATTAGCAATCCCTGTCGTGAtcggggggggggtggcagtctgtttttgaaactgCATCAGTGTGACGGTGTCTGTGGAAATGGATCTGCGATGATGGGGATTGAACAAGGACAGCCCACACATGCTCAGTGGGGTTGAAGCCAGTGTTCGACCAAGCTAGGGTCCAGATGTCTGACCTGCAGTTTGCTAGTGTTAAGGTTCAAGGATAAACTGTTCGTATTTGCAAACTTGGGTCTGATGACAGATGCTCATCAATCCACCGTTTCCAGGATCatgtgttcctgtttttttgtcttcctgATTTGGAATCCTTGGTTCATGACGAGAAGGAGGACCTGAGATCCTTCAGTTGTCCATAGTGCTCTCTTCGGTGTAACGCCGGGGGACCGAGTTCAGCCCGAGTGGCGTCGGTGCCGCCGTAGCGCCGGGCAGAAAAGGTTCTTCTTGATCTGTTGTTCAACGGCTGATTCATGGCACAGTCCGGATCCAGTGTGATGCTCCTGGTTTATCCTCGAGCCAAAACGAACACAGACGCCACTGTGGGCAACACCAGCAATGCCCTTCACACCGGGCCGGGTACAGAAACACGAGCTAATACTGCAGCCTGTCTGCTGATACTGACAGAGATATCAGATGTATTATTATCCTCTTGCCCTTGTGGAATTGAGGGGGGGAGATGCAGGGAGGTGAAAACCTGTGGGAAATACTGgttgatgtagattttttttattacataaactAGGGTGCTAGCAGGTCATCGTGctgagaaaataattttaaactaGCGCTTCTGGACTTCAATAAAGCACCTCAAAACAGCTGCTTCAGTACAGCATCGGTGTTGTGCTCAGGTCAAAATAACACTTCATGATGGGCAAGCGAGAGCTGTTCAGTTCAGTGGTACTTTCGAGAGGAAGGAGGGGAGCTGTGTGTGGCCGTTACTCAGTCAATCTTTGGAGGCTGTTTTGCAGTGGGTGTTCGACTGTGTTCCTGCCCAGCGAGGTTAAAGGATTCTACATATCTCCTGTGTCCCCATTATCTCACTTCCTCGTCACTGTTCCATTGCATGTGTCTGTGATCTGCTGGTGGGTTTggcaggggagaggggaggaaatgtataatgtgcAGCATTGCTATGATCTATGGGtacaacaaaaaaggcaatatACCTCAGGAATGTGCTTTTGacatacaaatatgaaacatgCAACAAAGAGTACCAAGGTTTGCAACCAGCAATTAAGTCAATAATAGTGAAATTCAAGTCAActactataaaaaaacaaaaacggttGTCATTGCACagctttcatttttgtgtgtttaaaaagagCGACTGCAAAAGAGCCTCACCGACAGGTTTATTTAAAACCAACCTTGTCTAATCAAGCTTTAGCACTTCACAGGATTAAACAAAATGGATTGCAGACCATGTACCCTGAATGTTGAAGGCATATTGGCAAGTCTCTGTACAATTAGTGTGAAAAAACGGTATGTATCTAACTGTCTTTGCATGGTTGGACgaaaacattttgtgttgttgtgttgatgCCCTGGAAGataacttattttctttaagttCGTGATGGTGAAGTTtcaatattgctttatttaaatcaacCAAATACATCCAAGTTTGTCCCCTGAGGACACGTCCCAATCAGGTTTCTGAGAGGAGTGCTACAAGCAAAGCGATGGCCAACAACCACATCATCTGGTACAGGACCACGATGTACATGATCAGTCTTGCACTGATGGGACTGTGTCAAATCTAGACCAACTAGACTGAAACCTGTGTTTGTAGGAAAACATGAGGATGGTCACTGTCTTCCCTTCTGCTAATCCCAAACAACATGCTGCAGGCTAAAACTACTAAAACGTCTTCTAATTAATTTGTGGGATTATTTGTGTGACAAGAAGGCATCCTAACAGTTGGCAGTTTTCAAGTGAAGGGCAGTGTCTGCAAACTTTCAGACGTCTTGTTTCTTATTGTACTCAGGGTCAAGAGCAGGGAGTGAATGTTTCTGTGAAGAACACATCTGGTGATTCCCTAATCGGCTTGGCGTTATTTGAGTTCTTGGTTATTAGTATTTGCCCAAAAAATAGGTTCGGATCTGCAGTAGGCATTTAAAAGATGATGTATGCTAGGTTTCTGGATGcttcttttatttcattttgttttatttctagcAGGTGTATGGGGGCAGAGTTATTTGATATGGACTGTACCCGTCCCACAGTACATTGTCTTGGATCCAGACTGTCTCGCTGGCTTCAGTCCACACTGAATTGTGCACATCTTGTGTAGCACCTCTTTTCATCCCAGTTTGGGGATTTCAAGCTGTGATTGCTCCTGCTCGGctgtattattttcctttataacCTGTcctgttgattaaaaaaagagagagggaaccCCTTTTCAGAAATAAGACTGGTTTCCAAACGGTCTTCatttgagattaaaaaagaaagtaaagcgGGTCTGCGACGGAGGAATGTCGAACGTTGTGAACTGTTGAAGCTCGACGCAAGCTGGGGACCAGTGTGTTTCCTGCTGGCAGCggctaatgtttttgtttgtttgtttttgtacatgtcATGAGGTTTGTGGTTGACATGTCTCCACTGAAAAGCATATTTGTGTATGCTCAATGGGGCCAATATCTCCACTATAATCAATCTTTTCAAATAATCCCTTCATCTTTAAAAGGCAGACATGCAATTCACGGTGCTTGCTTTCCCCCCCATTTCATTAtgcgtgtgtgggtgtgtgtgttttctcaaaGTTGttaaaagacattttttttgcattttatgttgCGAATTCTTAAAAAGCTTCTAATGCTCCAGCTGAAACTGAAACGAGAAACCAGTCATTTGCGCAGCGTATATTACCTTCCTCTCTCACGGGTCATGTTCTGTATTTTGAGTTTACAATGTAAAGATGATCGTggttaacacattttaaatatattgctgGTAACTGTAATTAACCAGTGCACATTTGTAAAATTGATGAAGTCTCCCAATATATAAGAATTGTATCTTGACTAAACTgaagtaaataatgtattatgaaaCTTATTTTTATGATGCTCAAGTGTGCCTGTTTCTATTTAGTTACTGAAAGGCTTGTTTAGTGAACTGCCTCAGTGAGAATACAAAGGAAAAGTCACAGTac
>TU117908
TTGAAGCCAGTGTTCGACCAAGCTAGGGTCCAGATGTCTGACCTGCAGTTTGCTAGTGTTAAGGTTCAAGGATAAACTGTTCGTATTTGCAAACTTGGGTCTGATGACAGATGCTCATCAATCCACCGTTTCCAGGATCatgtgttcctgtttttttgtcttcctgATTTGGAATCCTTGGTTCATGACGAGAAGGAGGACCTGAGATCCTTCAGTTGTCCATAGTGCTCTCTTCGGTGTAACGCCGGGGGACCGAGTTCAGCCCGAGTGGCGTCGGTGCCGCCGTAGCGCCGGGCAGAAAAGGTTCTTCTTGATCTGTTGTTCAACGGCTGATTCATGGCACAGTCCGGATCCAGTGTGATGCTCCTGGTTTATCCTCGAGCCAAAACGAACACAGACGCCACTGTGGGCAACACCAGCAATGCCCTTCACACCGGGCCGGGTACAGAAACACGAGCTAATACTGCAGCCTGTCTGCTGATACTGACAGAGATATCAGATGTATTATTATCCTCTTGCCCTTGTGGAATTGAGGGGGGGAGATGCAGGGAGGTGAAAACCTGTGGGAAATACTGgttgatgtagattttttttattacataaactAGGGTGCTAGCAGGTCATCGTGctgagaaaataattttaaactaGCGCTTCTGGACTTCAATAAAGCACCTCAAAACAGCTGCTTCAGTACAGCATCGGTGTTGTGCTCAGGTCAAAATAACACTTCATGATGGGCAAGCGAGAGCTGTTCAGTTCAGTGGTACTTTCGAGAGGAAGGAGGGGAGCTGTGTGTGGCCGTTACTCAGTCAATCTTTGGAGGCTGTTTTGCAGTGGGTGTTCGACTGTGTTCCTGCCCAGCGAGGTTAAAGGATTCTACATATCTCCTGTGTCCCCATTATCTCACTTCCTCGTCACTGTTCCATTGCATGTGTCTGTGATCTGCTGGTGGGTTTggcaggggagaggggaggaaatgtataatgtgcAGCATTGCTATGATCTATGGGtacaacaaaaaaggcaatatACCTCAGGAATGTGCTTTTGacatacaaatatgaaacatgCAACAAAGAGTACCAAGGTTTGCAACCAGCAATTAAGTCAATAATAGTGAAATTCAAGTCAActactataaaaaaacaaaaacggttGTCATTGCACagctttcatttttgtgtgtttaaaaagagCGACTGCAAAAGAGCCTCACCGACAGGTTTATTTAAAACCAACCTTGTCTAATCAAGCTTTAGCACTTCACAGGATTAAACAAAATGGATTGCAGACCATGTACCCTGAATGTTGAAGGCATATTGGCAAGTCTCTGTACAATTAGTGTGAAAAAACGGTATGTATCTAACTGTCTTTGCATGGTTGGACgaaaacattttgtgttgttgtgttgatgCCCTGGAAGataacttattttctttaagttCGTGATGGTGAAGTTtcaatattgctttatttaaatcaacCAAATACATCCAAGTTTGTCCCCTGAGGACACGTCCCAATCAGGTTTCTGAGAGGAGTGCTACAAGCAAAGCGATGGCCAACAACCACATCATCTGGTACAGGACCACGATGTACATGATCAGTCTTGCACTGATGGGACTGTGTCAAATCTAGACCAACTAGACTGAAACCTGTGTTTGTAGGAAAACATGAGGATGGTCACTGTCTTCCCTTCTGCTAATCCCAAACAACATGCTGCAGGCTAAAACTACTAAAACGTCTTCTAATTAATTTGTGGGATTATTTGTGTGACAAGAAGGCATCCTAACAGTTGGCAGTTTTCAAGTGAAGGGCAGTGTCTGCAAACTTTCAGACGTCTTGTTTCTTATTGTACTCAGGGTCAAGAGCAGGGAGTGAATGTTTCTGTGAAGAACACATCTGGTGATTCCCTAATCGGCTTGGCGTTATTTGAGTTCTTGGTTATTAGTATTTGCCCAAAAAATAGGTTCGGATCTGCAGTAGGCATTTAAAAGATGATGTATGCTAGGTTTCTGGATGcttcttttatttcattttgttttatttctagcAGGTGTATGGGGGCAGAGTTATTTGATATGGACTGTACCCGTCCCACAGTACATTGTCTTGGATCCAGACTGTCTCGCTGGCTTCAGTCCACACTGAATTGTGCACATCTTGTGTAGCACCTCTTTTCATCCCAGTTTGGGGATTTCAAGCTGTGATTGCTCCTGCTCGGctgtattattttcctttataacCTGTcctgttgattaaaaaaagagagagggaaccCCTTTTCAGAAATAAGACTGGTTTCCAAACGGTCTTCatttgagattaaaaaagaaagtaaagcgGGTCTGCGACCAGTGTGTTTCCTGCTGGCAGCggctaatgtttttgtttgtttgtttttgtacatgtcATGAGGTTTGTGGTTGACATGTCTCCACTGAAAAGCATATTTGTGTATGCTCAATGGGGCCAATATCTCCACTATAATCAATCTTTTCAAATAATCCCTTCATCTTTAAAAGGCAGACATGCAATTCACGGTGCTTGCTTTCCCCCCCATTTCATTAtgcgtgtgtgggtgtgtgtgttttctcaaaGTTGttaaaagacattttttttgcattttatgttgCGAATTCTTAAAAAGCTTCTAATGCTCCAGCTGAAACTGAAACGAGAAACCAGTCATTTGCGCAGCGTATATTACCTTCCTCTCTCACGGGTCATGTTCTGTATTTTGAGTTTACAATGTAAAGATGATCGTggttaacacattttaaatatattgctgGTAACTGTAATTAACCAGTGCACATTTGTAAAATTGATGAAGTCTCCCAATATATAAGAATTGTATCTTGACTAAACTgaagtaaataatgtattatgaaaCTTATTTTTATGATGCTCAAGTGTGCCTGTTTCTATTTAGTTACTGAAAGGCTTGTTTAGTGAACTGCCTCAGTGAGAATACAAAGGAAAAGTCACAGTacaatttactaaa

Function

symbol description
dcaf10 Predicted to be involved in protein ubiquitination. Part of Cul4-RING E3 ubiquitin ligase complex.

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 10

GO: NA

KEGG:

id description
K11802 DCAF10; DDB1- and CUL4-associated factor 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017972 True 6119 mRNA 0.48 7 30585740 30596417
TU117908 False 3010 lncRNA 0.42 2 30585729 30588789

Neighbor

gene id symbol gene type direction distance location
AMCG00017965 LOC107749781 coding downstream 4733 30538968 ~ 30580996 (-)
AMCG00017966 nfkb1 coding downstream 71534 30491226 ~ 30514195 (-)
AMCG00017967 NA coding downstream 94901 30489476 ~ 30490828 (-)
AMCG00017963 cisd2,LOC106602754 coding downstream 146120 30432203 ~ 30439609 (-)
AMCG00017954 NA coding downstream 456415 30121865 ~ 30129314 (-)
AMCG00017971 NA coding upstream 9096 30605513 ~ 30607128 (-)
AMCG00017977 NA coding upstream 62209 30658626 ~ 30722050 (-)
AMCG00017976 pigg coding upstream 148554 30744971 ~ 30776441 (-)
AMCG00017974 pigg coding upstream 213987 30810404 ~ 30811335 (-)
AMCG00017975 clg15h9orf72,LOC103354026 coding upstream 236376 30832793 ~ 30848229 (-)
G94483 NA non-coding downstream 124556 30456198 ~ 30461173 (-)
G94482 NA non-coding downstream 124841 30459549 ~ 30460888 (-)
G94392 NA non-coding downstream 476547 30108971 ~ 30109182 (-)
G94359 NA non-coding downstream 583447 29998354 ~ 30002282 (-)
G94358 NA non-coding downstream 588216 29996249 ~ 29997513 (-)
G94533 NA non-coding upstream 14404 30610821 ~ 30614319 (-)
G94563 NA non-coding upstream 121935 30718352 ~ 30721502 (-)
G94577 NA non-coding upstream 383478 30979895 ~ 30980552 (-)
G94590 NA non-coding upstream 782838 31379255 ~ 31380225 (-)
G94598 NA non-coding upstream 861462 31457879 ~ 31458254 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 1312561 29269235 ~ 29273168 (-)
G94172 NA other downstream 1709806 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 2441140 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 2745939 27838251 ~ 27839790 (-)
G93796 NA other downstream 4475655 26109060 ~ 26110074 (-)
G94543 NA other upstream 31571 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 1663290 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 1675277 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 1689068 32285485 ~ 32308080 (-)
G94835 NA other upstream 1858668 32455085 ~ 32456410 (-)

Expression


Co-expression Network