AMCG00017980 (ampm1,metap1,LOC107556924,LOC107733733,LOC106600494,LOC107695030)


Basic Information

Item Value
gene id AMCG00017980
gene name ampm1,metap1,LOC107556924,LOC107733733,LOC106600494,LOC107695030
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31609218 ~ 31621106 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017980
GTCGGGGGAAATCAGGCAGTGCTGTAGACGGCCGCACGCATCCCCGCTCCTCCCTATTCGGGGTCCTCCGCGACGCTCCAAGCCCCGCCCTCCCTGCGCCGTGACGCTGCCGGCCACGCCCCTCTCCCCGCTGCTCTCTCCTGCATCCGAGCGGCAGCATGGCGGCTCCAGAAACCAGGGAGTGCGAGACGGAGGGCTGTGTCAGCGAGGCCAAGCTGCAGTGTCCAACCTGCATCAAGCTGGGGATCCAGGGCTCCTACTTCTGCTCGCAGGAGTGCTTTAAAGGGAGCTGGGCTACACACAAGTTGCTACACAAAAAAgcaaAAGAAGAGAAAACCAAGGATGAATCGAAGAAAAATGTGGATAACGACACCAATACAGACCCCTGGCCTGGCTACCGATTTACTGGCAAACTTCGGCCGCACTACCCTCTGacTCCAATGAGACCTGTGCCAAGTTATATCCAGAGACCAGATTATGCTGATCACCCATTAGCAGCAGAAGTTGGGCTCCTAGCaggaaTGTCTGAATCTGAACAGGCCTTAAAGGGAACCTCTCAAATTAAGATCCTTTCACCAGAAGATATAGAAGGAATGAGGGTTGTGTGTAAGCTTGCCAGGGAAGTCTTAGACATCGCTTCGTTGATGGTGAAGCCTGGAGTTACGACCGAGGAAATCGACCATGCCGTGCATCTGGCTTGCACGGCTCGAAACTGTTATCCGTCTCCGCTGAACTACTACAACTTCCCCAAGTCCTGCTGCACATCGGTGAACGAGGTGATCTGCCACGGGATCCCAGACAGGAGATCCCTGCAGGACGGAGACATTTTAAACGtggatATAACTGTGTATCGGAACGGCTACCACGGGGATCTCAATGAAACCTTCTTCGTTGGAGAGTCTGATGAAGCTGCCAAAAAGCTGGTGCAGACGACCTATGAATGCCTTATGCAAGCCATTGACTCAGTGAAGCCGGGTGTCCGTTATCGGGAGCTGGGCAATATCATCCAGAAACACGCGCAGGCCAACGGGTTCTCTGTGGTGCGGAGCTACTGTGGACACGGCATCCATAAGCTCTTCCACACCGCCCCCAATGTGCCACATTATGCCAaaaacaaagcagtCGGAGTGATGAAGCCAGGTCATGTATTCACCATCGAGCCAATGATCTGTGAAGGAGGCTGGCAGGATGAGACGTGGCCAGACGGCTGGACTGCGGTGACCCGGGACGGGAAGCGCTCCGCCCAGTTCGAGCACACCCTGCTGGTGACCGAGACGGGCTGCGAGATCCTCACCCGGCGCCTGGAGGACAGCGGGCGCCCGCACTATATGTCCCAGATGTAGGGCAGACGTACGAGGGATGGCTCTTCCGACTTGACCCCTGACGGAACTGTGCAGAGCGCTGCCACACCCCTGCCCCCGCCGGCAGCGCTCCTGGGGTCTCGGAGATTTCCCCGCACTCGTCTGCGTTCGTTcgctttgttttctgttgttttatgcAAGTACTTGAATACATCTGGATGGGATTTCTTGTTGTGGGCTGTTTTAGAGTGAAGAGTCGCCCGTTTTTAATGTCCTCGGAATTCATTGAGTCGTGAGAGTCGAAGTATGaccaagataaatatttaaataaaggtttatttatgaTGAGTGCTGTTCGGCACAGTCGTATCTGGTCTATTACACTTTTATACGTGAGTAAGCTGGGGTTCAGTTTAACCATGCGCAGGTGCGTTACTGTCGGAAATGCTGTAACAATGTACACTGAGCGGCGAAATTCtgtcttccccccccccacactggGTCAGCCACCACAGTGATGTATTTGAGTCGGGCGTATGACTGGAAAAGTCCCTGTGTTTCCTTGTTCTACATTCCTGCACAGCTATGAACCCCAGTGAATTTGGTGGGAAGTTATTTGCAGTTGATTAAATTGTTCACTCTTTATGGTAGAATTGCTGAAATGGTAATGAGCTCATTGTTATATTTGGTTTTAATCTAgtctagaaaaacaaaagcatattgGTGCAGAAAACGAATCATGAGTGGAACAAAACAaaggtaaaatatacattttaatcaaaaaatGACCATATCGTCTTCATAGTTAGCATTTACTGCAAGATAACTGACTCTCACTTTTGAAATTATAGATGCTGGATATCCAGTCTTATCTGTTTTGTGGTagttatagattttattttggaaatcaaGAAATAAAACCTTAAGGTTTTCGTGTTGTGAGAAAATTACAGTGTTACTCCCAAAGACAGCGATGGGGATTAGTCTACAGTCGTCTCACTTCTGCGGTCGCCTCACAGCTTCACTACATTGCAGTAGAGCACGTGTGTCAGAATTGTAtcgtttatattttattgtccaGTTACGATGTTCTacgcaaaacattttttaacacagAGTATATGTGATTCCGCCAAGGATCCATGGTGTCCGTGCTATTTCACAGGTACTTGTGTAAGAGAACTGTGTGAATTGCGCAGTCGGCTCGTTTTCCTACACTGGTGCTGGGGAGCTCGTTAAGTGcgtcattaaaatgaaagatttgTTCAAATGGTGAAAGAGTGTGgttcattttgttaaatgtgttaaagaCTTCAACTAGGTTTTAAAGTGGTGGTAAATACAAGGGTTTTTCCCATTCCTTCTGTTTGTATCTTATAAACACAATCCAGAAGGTTTATTGAAGAAGTAATTTCATCCATGACTTtctaatatgaaaatgtttaccATTGtacttaaaatgaaatattct

Function

symbol description
metap1 Predicted to enable metal ion binding activity and metalloaminopeptidase activity. Predicted to be involved in protein initiator methionine removal. Predicted to act upstream of or within proteolysis. Predicted to be located in cytoplasm. Is expressed in immature eye; myotome; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human METAP1 (methionyl aminopeptidase 1).

NR:

description
PREDICTED: methionine aminopeptidase 1 isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K01265 map; methionyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017980 True 2772 mRNA 0.48 12 31609218 31621106

Neighbor

gene id symbol gene type direction distance location
AMCG00017973 NA coding upstream 952294 30656133 ~ 30656924 (+)
AMCG00017968 LOC106604549 coding upstream 977983 30620823 ~ 30631235 (+)
AMCG00017969 NA coding upstream 994884 30611050 ~ 30614334 (+)
AMCG00017970 NA coding upstream 1004975 30596996 ~ 30604243 (+)
AMCG00017964 NA coding upstream 1071754 30520635 ~ 30537464 (+)
AMCG00017982 NA coding downstream 24719 31645825 ~ 31649592 (+)
AMCG00017981 NA coding downstream 38795 31659901 ~ 31675037 (+)
AMCG00017985 NA coding downstream 119462 31740568 ~ 31745981 (+)
AMCG00017989 NA coding downstream 494055 32115161 ~ 32123373 (+)
AMCG00017996 NA coding downstream 560596 32181702 ~ 32186561 (+)
G94601 eif4e,if4ea,LOC103354029,LOC107085786,LOC107730661,LOC105908755,LOC107696296 non-coding upstream 6106 31599760 ~ 31603112 (+)
G94599 NA non-coding upstream 92189 31516828 ~ 31517029 (+)
G94594 NA non-coding upstream 191098 31417849 ~ 31418120 (+)
G94591 NA non-coding upstream 213852 31395146 ~ 31395366 (+)
G94583 NA non-coding upstream 268386 31324524 ~ 31340832 (+)
G94609 NA non-coding downstream 1350 31622456 ~ 31623543 (+)
G94613 NA non-coding downstream 7499 31628605 ~ 31629313 (+)
G94664 NA non-coding downstream 146530 31767636 ~ 31767848 (+)
G94668 NA non-coding downstream 238888 31859994 ~ 31864202 (+)
G94681 NA non-coding downstream 277396 31898502 ~ 31899680 (+)
AMCG00017978 NA other upstream 777351 30819869 ~ 30831867 (+)
G94275 NA other upstream 2158871 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 2962468 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 3911839 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 4611766 26992891 ~ 26997452 (+)
AMCG00018012 NA other downstream 786323 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 840192 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 886584 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 1168335 32789441 ~ 32793604 (+)

Expression


Co-expression Network