AMCG00017985


Basic Information

Item Value
gene id AMCG00017985
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 31740568 ~ 31745981 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017985
GCGGGATGTGGCTGCGCAGCTGCACGTCGCCGAGAGAGGGAGGATGCTGCAAGCACGTAAAGGGGCGTGGCCACGCCAGTGCGCAGGCGCTGGACGCAGACTGAGCTGAGCTGTGCGGTTGGCGCGGCGGACACACAGAGTCCTTTATCTCTAACAAACTGCACGGTGGTAAGCAGGTTTTTAGGCGATAATGTTTCAACAcgacagagacagacacttcCCCGAGGACTTTGTCTGGGGGGCAGCTTCTGCAGCCTATCAGATAGAAGGCCGGGTGTTTGAGGACCAGACCGGGGACGTGGCTTGCAACAGCTACGAGCTCTGGGAGGAGGACCTCAGGTGCATCACGCAGCTTGGACTCACGCACTATCGCCTGTCCTTCTGCTGGTCCCGGCTGCTGCCCGACGGGACCACGCGGCACGTCAACCAGAAAGGTGTTGATTATTACAACAGAATAATAAACGACCTGCTGGCAAACAGCGTCACCCCGATGGTGACCTTGTATCACTTCGACCTGCCGCAAGCGCTGCAGGACCGAGGCGGCTGGGAGTCCGAAGAGATCGCGGGCTTCTTCGACGAGTACGCGCGGTTCTGCTTCCGGACCTTCGGGGACCGGGTGAAGCTGTGGGTCACCTTGAACGAGCCCTGCGTCTGTGCCGAGCTGGGCTACGAGGAGGCCTATCACGCGCCGGGGGTGCAGAAACCAGGAACGTCGGTGTACCTGGTGGGCCACAACATGCTGAAAGCTCACAGCAGAGCCTGGCACAGCTACAATCGCCTCTTTAGATCAGAGCAGCAGGGGTTGGTGTCCCTGGCTCTGAACAGCGACTGGGCCGAGCCCTGCGATCCCAGCAACCCCGAGGACGTGGCCGCCACCCAGAGATACATAGCATTCTCGCTGGACTGGTTCGCCAGCCCTGTTTTCGGCGACGGCGACTATCCGGCCGTCATGAAAGCCCAGATCGCAGCGCGGAGCCGAGCGCAGGGCTGCCCGTCCTCCCGGCTGCCGGAGATCACGCCGCAGATGAAGGAGGAAGTCAAGGGAACGGCCGACTTCTTCGCCATAAACTACTACACGTCCCGCAGAGTGAGGTTCACCAAGAGCGCGGCGCAGACGGTGAGCTTCAGCAGCGACAAGGAGGCCGAGGGCATCGTGGATCCGTCCTGGCCCATTGCGGGGGTGTCCTGGATGGCGGTGGTGCCCTGGGGTCTGAGAAAGCTGCTGAAATATATTAAGGACTCGTATGGCGACCCTCGCATCTACATCACGGAGAACGGCTTCTCTGCAGTGGACCCGGCGCCGCTCGAGGACACCCAGCGATGTGCGTTCGCCCGAGACACGCTGCTGGAGGTCCTGAGAGCCATTCGCCAAGATGGGGTTGATGTGAGGGGCTATTTCGTGTGGTCCCTGCTGGACAACTTCGAGTGGGTGCAGGGGTACAGCGTGCGCTTCGGTCTGTTCCACGTCGACTTCACACATCCGCGGCTGAGTCGCACAATGTACAGGTCAGGAGAGCAGTACGCCAAGATCATCGCAAGCAACGGACTTAGCGCTGTCCAAGAGGGCTGAGGCTGCTCACAACTGCAGCCCCTCAGTAGACGTAGTAGTCAAATCACTAATTATATTGTCTTTATTAAATTGGCTGATGTCTTTATCAGAACGGAAAACAAGATTACATTCCAAAGACTGTATTAGTGAGATTAAAGATGATTTCTGACAACCAGACACTCCTGTTTGGGCCTCATCAAGCTTGAACACAACCGTAagctaatttaaaatacagttgatTAAAGTAAGAACAATATGaatcatttgtttaattgttttatgtacTTTATGATACTATTTTATAGAATCAGTTAAATTCTGCTTTATGTTATAATGAATCTTTGTATTAAATGAATCCCTCCACTAATAAATCCCGAAGCTGAATGTGTGCCAGTGATCCCTTGGTGTTTTATGTCTAAGCTTTTAAACATATCAATTTTGTTTAGTACCATAGCGGTATATTATAGTAGTATGAAGCCTTGCTAAGGGCTTTTTAGTGTTGAGGTAAAGTCGCTGCACTGTGGCGCAGTAGAACGAGTCACCATGGCTGGAACCTCACAGTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG:

id description
K05350 bglB; beta-glucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017985 True 2112 mRNA 0.54 5 31740568 31745981

Neighbor

gene id symbol gene type direction distance location
AMCG00017981 NA coding upstream 65531 31659901 ~ 31675037 (+)
AMCG00017982 NA coding upstream 90976 31645825 ~ 31649592 (+)
AMCG00017980 ampm1,metap1,LOC107556924,LOC107733733,LOC106600494,LOC107695030 coding upstream 119462 31609218 ~ 31621106 (+)
AMCG00017973 NA coding upstream 1083644 30656133 ~ 30656924 (+)
AMCG00017968 LOC106604549 coding upstream 1109333 30620823 ~ 30631235 (+)
AMCG00017989 NA coding downstream 369180 32115161 ~ 32123373 (+)
AMCG00017996 NA coding downstream 435721 32181702 ~ 32186561 (+)
AMCG00018002 NA coding downstream 445768 32191749 ~ 32194198 (+)
AMCG00017995 LOC107558400,LOC106943316 coding downstream 466198 32212179 ~ 32217730 (+)
AMCG00017997 NA coding downstream 472728 32218709 ~ 32228691 (+)
G94613 NA non-coding upstream 111255 31628605 ~ 31629313 (+)
G94609 NA non-coding upstream 117025 31622456 ~ 31623543 (+)
G94601 eif4e,if4ea,LOC103354029,LOC107085786,LOC107730661,LOC105908755,LOC107696296 non-coding upstream 137456 31599760 ~ 31603112 (+)
G94599 NA non-coding upstream 223539 31516828 ~ 31517029 (+)
G94594 NA non-coding upstream 322448 31417849 ~ 31418120 (+)
G94664 NA non-coding downstream 21655 31767636 ~ 31767848 (+)
G94668 NA non-coding downstream 114013 31859994 ~ 31864202 (+)
G94681 NA non-coding downstream 152521 31898502 ~ 31899680 (+)
G94713 NA non-coding downstream 345439 32091420 ~ 32093044 (+)
G94739 NA non-coding downstream 418838 32164819 ~ 32165297 (+)
AMCG00017978 NA other upstream 908701 30819869 ~ 30831867 (+)
G94275 NA other upstream 2290221 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 3093818 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 4043189 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 4743116 26992891 ~ 26997452 (+)
AMCG00018012 NA other downstream 661448 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 715317 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 761709 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 1043460 32789441 ~ 32793604 (+)

Expression


Co-expression Network