AMCG00017989


Basic Information

Item Value
gene id AMCG00017989
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32115161 ~ 32123373 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017989
AAGACCcatcacacaaaacacacttcactaattcattcatattataatgattgtgtacagaatcaaaacaaaacagcagaaaaacagtCACAATAGACATCAAATCTGTCATCAATATAACAGATCATTGATCATTAAACCGGGAATTTAGGCGAGTCATGTGCCGGGACGGGGGCAGTCCTGCTGTGGCGAAAGAGGGACGCAGCTGCGTAAGCGGCGCCGCTGCTCCGCCTGAGCGACACTGCGCAGAACTGCTGCCTGCGGCCGGACGGCGAGATCCGCTGCGCTGCCAGacaTCCTCTCTCCAGGCCTGTAGAAACACGGCTCAGAAGATGTTATCATTAAATTGGCTGCTGGTGTTGGCGCTCCTCTCGGCGCCGGAGTCCCTGTGTGTCGAGATCTCTGGCAGGGAGGGGCCGGGCCAGAACGGCACGGAGGAGATGCAGGCCTCGGGGCCCGGCCCGGCCAGCATCGAAGGGGAGGCCAGTAACGAAGACGTACTGGTGTACGCGGCCTGCGAGATGAGGCCGAGCAGCAAGCTGGCGGACGGCAGCCCCAAGGTCACCGGGCAGGTGCTGTTCAAGCAGCAGTATCCCGATGGCAACCTTGAAGTGCTGTTCAATTTAGATGGCCTCCCCATCAACGACAACCAGTCCAGAGCGATCCACGTGCACCGGTTCGGAGACCTCAGCGACGGGTGCGACGCCACGGCCGGCCACTTCAACCCGGACCAGGCCGACCACCCCAAGCACCCCGGGGACTTCGGCAACTTCACCCCCAAGAAGGGCAAGATACGGAAGAGCAGTAAAGACAGCAAGGCCACCCTGTTGGGGCCCGACACCGTGCTGGGCCGCGCCGTGGTGATCCACGAGAAGGAGGACGACCTGGGCAAGGGCGGCGACGCCGGGAGCCTGCTGCACGGGAACGCGGGCAAGCGCCTGGCCTGCTGCGTCATCGGGGTGAGCTCGGCACATCTCTGGACCAGCGCCGCCGAGAGCCAGGCGCTGAGGAAGAAGAGCGCCAAGCGGCTGGCCAAGAAAAAGGTCTAGCTGCACGACAAGCTCGGAAATCTGGGACGTGATTTTGCCCCTCGCTTCTCTAATGGACAAGGTTCCTGCGCTTCTCcaagtgtttctttttcatttcacaacAATCTTAagagagaaatgtataaatatagacATGTTAGCAGTGCGGTGGGCTGACCTTTGCTGACACTTCTTGTGTGTGGTTTACAGGTGGGGGTCGGGACTGAAGTGTGTCGAGTGAATTCAAAGGGTAGAATTTACTTTATATGGAACAGGTTTAAAATGTACTAGAAGTCTCAGttctttaacaaaaaacaattgataACAACTTCACAGCTGTTCATAGTCAAAAGAGAAGGAATAGAATAATCTGCCCAACAGAGAGAAACCCGTCCCAGTCTGGTACTTTGGCTAAAGTACTTCTTACTAAACCCTATCCAAAACTTTCTGCAGCGCCAGCAGGTTTTATAACTCATTACACACAAACCTGCCGCCATCAAAAGTGTCAGTGGATTGTTTCAAGACTTTCCTTGGACAATGTGTTAATTTGTGCAATGTGCTCTTTGGCCCTGTTGAGTAAGATGTATCattatatgaatgttttttcttgtcttaCAAATACCATTAGAAACTAAAAAAGCATTATTCACCTCCTGATTAAAGTGTGGTTTGGGTTTAAATGTAGACGTGACTCttctttaaaagaaaggaaaaaggggAGGCCAACAGTATCTGAgatgtatctttattttaagtttaaagtgATGAAATGTAACTATCTATGCAGCACACGGTAAGGACAGCATCATGCAACCcaagcaaaatataatttgttcaaGTATTCCCACAAAATATAGTTTGCAAGGCGCCCAGTGATTAATTATACAGCCGGCCTGACACTCGGGACATTTCATTTACCTGAGATGGAAACAAAACGAGACagacaaaaccaaacacaaattttaatattcattaaaCCAACTGACCTGTAGTTGAAACAGGTGGTGATccacacaataaattaaaaatgaaagcgTTTCGTACAGAAGTCAGAATTAGTTTTTTCCGCAGCCAAGAACTCTTTATGGTAATGAGTGCGTGTGTCAGCGGGTTGGATTTCCATAAAAATCccattactgccttaaaatacaatcactggcagacacagaaaacaaccaccaccaccataataataataatatgaataatattaatctgAATCCGTGCAGGATGGAGGTTGTGTTAAGCAGCTGTGTGATCAGCTACAGTGTGAAGCTCTTGTGTTTACAAAGTTAAAGATACAACTCTCCCTGTTCACCAACCCAACCCAACCACCGGCACCGGGGCCCGCGGGTTCGTCAGCGCCGGGAGGCTCGTCTGAAAACAATTTCCAATCAGATACGAAAATATATCTCTATAAAAATCCAACAATTCCTTAATAAAATAGTCGTCAGATAACTCTTTGATCTGAcggcacatttattttaaatgcgtTTTCGTCTCGGCCCTCTTTGCTTCCTTGATTCATGCTAAGAAAGCCGTGTGTATAATTTGGATGTGAAGACGGAGAGATCGCGTAGAAGcgacaatacaaaacacacacagggcatGTACCAGGGCATCAACACATCCTTGGCACGTACTAGGACACAAACATGCAACTGACATGTTGTAGgacacaaacagacttttacagaGACAACAGACCACCACTGGCGTGTAAGGTGGTATGACTTTAACGTCACCTAGTGTTGAGATACCTGGCGAAAATACACTTTCCATTCCTCAGGTGTGTGAAATTgtccaaaagtaaaagtaactGCCCTTCCCACTTCCAAGTATTGTAACTGTAACCGAGCCGCAGACAAACTACAACTGAGGCCGGAGGGGTGAGGGATTTAACTTGTGGCAAGAAGAATAATTCTGTTCAAGTCCAGCGGTTAATGAGACAACAGATGCACAGCAAGCATTCCTCAAAACACACAGTCTTCACATTCAGCACATAATATACATCATCTTTAGCAACATCACTTTGACAACAACAttcctttcaaaacaaacttttgGCTCTGTCGAGAGGTCTGCTGCACTGGACAGGTCTACTCCAGTACCAAACCGGTTCAAGGCAAACGTCACAATGGGACCAACGTACACGTCCACCCGCGGACGCAGAGGGGAGACACAGGAGCACAATTACACAAAGCAGCGGCAGGCTCGTCTGCAGGCTGGCAAAGGTGGGCGACGACATTTTTCAACCGATGCCGCTAACAGAAATTCTTTGAATACTTCATTCTTTGGAAAAGAGCGAGGCAAGGAAACCCACAAAACACTGACAGTGAGGAAGCGGCTGCCAACGCACGGCACCACCGCGGCGCATGAGCGGCGCTTCTTCCAGAGAGATCCGAGTTCACAGTCAAACTGCGGCCGCAACTCTCGGTCACAGACCCTTATTAATGATCAACAGAAGATTGAGAAATGTCAGGACCGGATCTGAACACCGGGGCCGGGTTGCACAACTTACTGTGCCAAATGGACAAATATTTGCGTTCGGATTTGAGAATCTCAGTGGAATCACATCTCACTGCGTTACACACTGATCACCTGCAGGAATGCGACATTTTCAGTGTCTGAACTGGGAATCAACTCCTCATTCAGTAACatcaggaagagagagagagaaactgcttCAGAAGTTCAGAGCAGCTATTCCAACACGCCGTGAATTTGCGCAATGGTTGTTTTTggttcttctcctcctctctctctttatctcgaGTTCAAGAGCGTTGCGTGAAATCACACAATCTGTGAGCTTGTGCGTCCTGGGAGAATGTCACAACTCCCAGTACGGCGGACGAgaatacattgaaatgattttaaaaacttAGTTCCTTGGGAATCGAACGACTCTGAGCCGCGCTGAACACGGAGTtcagctaaataaataattatcgAATAAACACTTCTGTGGTAAAGCCGCTGCTGTTCGCAGAGATATCACAATGCTATgcgcccccccctcccccgcgcTTAGAGAGCATGCTGGGAGCTTTCTCAGGGACGCACAGCCGCGGTGCCTCATCTGCACACGAAACGGCTCCGAGAATCCCACCGGGGCCTGCGATCCCACCTGTCTGACACCCGTCACACCGTTGCTCGTTCCTACAGACCCGCCCCGTCAGGACTGCACCTCTTCCCAAACCAGAGCCCCTCCTGCGCCGATTACACAAGAACCTGCCACCAGTGAGGTGCGCTGGGACAACAGTGAATTAGGACGTGCGAACCCCCCAGGAAGAGAAAGACACATACACTTCCTATTCGATTATTCAGTAAAGATGGCAGACGAACCCCTCGTCCTTCTGCTCAGTGACTGTGGGGTGTGGAGGCAGCCGGAGGTCTAACGCTCTGGCAGCATCTCCTCACTAGTGAAGGGGATCCCAGGTCTCACCACAGCCATGAGAGAACTGGCCTCAGAGTCTGAAAGAGCCCCCAGGTTCACAGACGCAGGCAAGCTGCTCCCGCACGACTAAGCAGACAGGCTGCGGTGGGAGGAACGCAGCGGTGAGCCTTGAAGCAACACCGGAAACATAAATCAAGCAGGGCACACGCCAAACCAGCGCCAAACCAATGCCACACCAGggccaaaaaaatacaaattgaagtgCAGATGGGCTGTGATCAGGTTCCTTGAAGGGTAAAGCCCAGGCCGGGAGCCTCAGCTTCAGACACGAAGGCGGCATCCGAGTGGCACAGGCCTGCTGAAGCAGAGTGGGGGGGGCACAAGCACTCGGATGCCTGCTGCGGCCCCCGCTGCCAGTGCTCCGGTTTTTGATTAAAATCAGTAGATGAGCTGCTTCCCAGGGAGCCGGTCCTAATTACACCCCCCGGAGCCGAGGACAGTGGCTGTCACTGCGTgggagggggggcagagagCGCATTTCAGCTCCTCCAGCCGCCTGGCAGTCggcacacaacacaaacactggtTTAATcgattgtgtgtgcgtgtgtggggagggggcaAGACAACATCAGACACTGCTTTAGATTGTATTGTTCATCCTGGCTGTCTTTGTCCAGGGGCGGCTGAGCGGTGCCCTCGGCCTCAACGTCCGCAGCTCCCCTCCACAGTGGGGCATCACCCGGCAGTGAGGGTCCCATAAAGACCCCCGCGAAGGAGCCCATCAATAATCCTCCCCACACGCGATCCGACAGCTGCGTCAATGAAATCTACACACTAAGTAATGCACACCGGCCCCCGAGGGAGATGCACAGCCTCTGTGTTACGCTCAACTCGATCAATGACCGACTGTACAGAACCGCACCGAGCCGCGGGCATCAGCTACTCTCCCCTGAAGCCAGAGGACAATCCAACAAGCGCCGCCCCCCCACACAGGGCAGCGAGACGATCCCGAGCCTACAGGAAGGGATGCAAAAACTGCCGGCCTGTGTTAATGAGCCTCACATCACGACTTTCTCAGCACCGAGCTGAACCGGATCgatgcatttatttcagtttcatggTGGAGGCTGGTGTTCCAGACCACAGAGCACAGGACAGAAAAGCTCTGAAGATCCCACTGAGCTCTCATCTGACAGCGCCGACATTTCACTCGACCGTTTAGCATCATTAATGCGATTCCTACTGCAGCGAAACTGGCAATATTTCCTCCGTGTTGCTTTGGCGGCGACCCGGACACATTCACCACAATCTCATTAGCAAAGCTCCACTCACTCTGTGAAAAGTCACATCCCTGGAGCTGCATGCCAATAAGCCCGATAGCGGGCAGCCGTGTGGGCACTGCGGATAGGACGGCACACAACAAACCCCAAAAGGTTCCCGTTTTGCAAATTAAGCAATTTATAAACAAAGACGTGgtgttattttcaaaaagaaGAGCCAGCTGTCTGGCTATTGACTGCTggtctttttcactttttttgacGCAGCTTGAAGGCGATATTTAGTGTTTTGATGGAGTCACACagactcactctctctctctctctctctccctccctacTGCCACAATTGAATTCAAAATTTGCATCTCTGAATAAATGTTGCACTCATCCACATGCCGAGCTGCagtgcccccccctccccacgtCTGTGCGTCTCTCCACCGGTCAACACAACTTCAGTCCCGTAACGCAAGACAATAATAATGCGCTACAGTAAGCGATATGAAAAGCAGAGGTAATGGAAGAGCACCGATTCCAATGGTGACGGCTGATGTCAGGACCACATCAGAAGACAAGCTTTCACCAGCTGTTTCAGTAGCACGTTTGAATCCtcattacccccccccccctatgGAAAGATTCTCAGCTTATTTTTGTGGAAAAACCCGGATAATGAGGTCTGTGCCAAATCCAGCTTTTCAGTCATTTTCCTGTAAGTGTCTGAACCAACACGTTTCAGCTGAAGGCCACGAGCTCTTGAATCACAGCTGCTTacgtctctctcgctctcttttcatcaaagaaaaaaataaaattgacaatTGATGATAATGAATGTCAACTTCTGTCATTCTTGAAATGCACTGCAGGTCAACATAAACACGCAGACAAAACCACAGTGTGCAACATCTTCACTTAGGGTTGAAAAAGCAAACTGAtttaaaagaatacattaaaaggtTTATCCTTCACGGCGATGCTGACCCACGCATTTCTCTGCGGGTCTACAGTCTGTGTGAAATGAGTCACGGTAACGAGGGGTCAGTAGACGAGCCGGAGCCGGTGGATCTGTGAGCCGGCGGCAGCATCCCGGCCAGGCAGGGGAAGCAGATCTGGAAATCATACAGCGCCACCTATGCCCTTCTCCCCGAGCCCTCTTCAGGCCGAGCACCCCCTCCGGTCCCCGAGGGGAGGAGCCTGTCTGCAGgaccccaaaaaaaaataacccgTTGCTCacaccaaattaaataaaagaaaaaacacaaacaggagaCGTGTGGGTGAGGCCAAAAGCGCAGTTTGTTGCAAATCttaagttttttctttaatgcgTCATTAGGATCTGCGGTTCAGGGGGGATCTACGCCAGACTGTGGCTACAATAGTCCTCGCTGCTCCCCGAGTCACAGCCGGCGCCAGCCTCGGCCTCCCGGGGCAGTAAGGGGCTGCTGACGGAGGTGCCCCGGGGGGGCGGTGCATGGATGCGGGCAGCCTCTCCAGGGTTCCCCGACTCTGAATCGGTGTCTGGGGGTGTGTCGTGGCCCTGGGGGGGCTCTGCGGCACCGTGTGGCGCCCACTCCTGCCCCGGGCCATGCGGTGCAGTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16627 SOD3; superoxide dismutase, Cu-Zn family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017989 True 7318 mRNA 0.51 2 32115161 32123373

Neighbor

gene id symbol gene type direction distance location
AMCG00017985 NA coding upstream 369180 31740568 ~ 31745981 (+)
AMCG00017981 NA coding upstream 440124 31659901 ~ 31675037 (+)
AMCG00017982 NA coding upstream 465569 31645825 ~ 31649592 (+)
AMCG00017980 ampm1,metap1,LOC107556924,LOC107733733,LOC106600494,LOC107695030 coding upstream 494055 31609218 ~ 31621106 (+)
AMCG00017973 NA coding upstream 1458237 30656133 ~ 30656924 (+)
AMCG00017996 NA coding downstream 58329 32181702 ~ 32186561 (+)
AMCG00018002 NA coding downstream 68376 32191749 ~ 32194198 (+)
AMCG00017995 LOC107558400,LOC106943316 coding downstream 88806 32212179 ~ 32217730 (+)
AMCG00017997 NA coding downstream 95336 32218709 ~ 32228691 (+)
AMCG00018001 NA coding downstream 114038 32237411 ~ 32238888 (+)
G94713 NA non-coding upstream 22117 32091420 ~ 32093044 (+)
G94681 NA non-coding upstream 215481 31898502 ~ 31899680 (+)
G94668 NA non-coding upstream 250959 31859994 ~ 31864202 (+)
G94664 NA non-coding upstream 347313 31767636 ~ 31767848 (+)
G94613 NA non-coding upstream 485848 31628605 ~ 31629313 (+)
G94739 NA non-coding downstream 41446 32164819 ~ 32165297 (+)
G94763 slc1a1,LOC107691854,LOC107561518 non-coding downstream 110398 32233771 ~ 32237191 (+)
G94792 NA non-coding downstream 224089 32347462 ~ 32350363 (+)
G94858 NA non-coding downstream 393750 32517123 ~ 32535900 (+)
G94899 NA non-coding downstream 623451 32746824 ~ 32762583 (+)
AMCG00017978 NA other upstream 1283294 30819869 ~ 30831867 (+)
G94275 NA other upstream 2664814 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 3468411 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 4417782 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 5117709 26992891 ~ 26997452 (+)
AMCG00018012 NA other downstream 284056 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 337925 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 384317 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 666068 32789441 ~ 32793604 (+)

Expression


Co-expression Network