AMCG00017990


Basic Information

Item Value
gene id AMCG00017990
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32143816 ~ 32151676 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017990
ggcTGTTGCGTCCCTGCCGAGCAGCTCCAGGGGCTGATAAATAATTCACCCACACAGCTTGGTGCAGTTCATGGTGCAGCGAGTCAGGAGCTGTTTGCATCGCCACCCTCCTCTCCAACACACATGCAAGCCTGCGATTCGAGATGTTGTCTCCCAGTAAGcagcttttgttattttctccGGTGTTTCTGTACCTGATTGCGGCAGTTTACGCCAGACGGGTTTTCCGATGTCCTTCTACATGCACCTGCACCAAGGAGTCTATTATATGCGTCGGGTCTTCGTACGTCCCGAAGATCATTCCCAATGACATCAATTCACTGAGCATCGTAAATGGCACCTTCCCTGAAATTAAGGAAGGGATGTTTTCCCACATGCCCTCCCTGCAGCTCCTGCTTCTCAATTCCAATTCATTTACCACCATTAAGGACGATGCGTTTTCTGGGCTTCCACACCTCGAGTATCTATTCATCGAGAACAACAGGATAGAGTCGGCGTCGAAATGGTCCTTCCGCGGCCTGCGCGATCTGACTCACCTGTCCTTggcaaacaacaacatcaaGGCTCTGCCGAGAGACATCTTTGGCGATCTGGACTCTCTGATAGAGCTGGACCTGAGGGGTAATGCTTTGGAGTGCGACTGCAAGGCCAAGTGGCTGATGTTGTGGTTGAAGACCACCAACGCCACGGTGTCCGAGGTGCACTGCGTCGGCCCGGCTGAGATGAAGGGCAAGAGGCTGAATGACCTCGTCAGTCTACACGACGAGTGCAAGTCCACAGACTTTGTGCTTCATCAGTCTCTGGCGTCTCAGTCGTTGTCCGTCGACACCTTCCACCACAAGAACGATGTGTTCGTGGCCATCGCGGCGCCCAACACCGAGAGCTGCATGGTGATGCAGTGGGACCACATTGAGATGAACTTCAGGACTCACGACAACATCACAGGGCAGTCCATTGTCGGGTGCAAGTCTGTGCTGATTGAGGCCGACGTGTTCATCATTGTAGCACAGCTCTTTGGGGGCTCCCACATCTACAAGTACGACGAGAGCCAGAGCAAGTTCACCAAGTTCCAGGACATCGAGGTGTCCAAGATCTCCAAGCCCAATGACATCGAGACCTTCCAGATCGACAAGGAGTGGTTCTTCATCATCGCGGACAGCTCCAAGGCCGGCCTGTCCACCCTGTACAAGTGGGAGAGCAAGGGCTTCTACTCCTACCAGTCCCTGCACGAGTGGTTCCGCGACACCGACGCCGAGTTCATCGACCTGGAGGGGAAGCCCCACCTGATCCTGGCCAGCCGCTCCCAAGTGCCGGTGATCTTCCAGTGGAACAAGAGCGCCAAGAAGTTTGCGGCCCAGAGCGAGATCCCCAACATGGAGGACGTGGTGTCCGTGAAGGCCTTCCGGGTCAAGGGGGAGCTGTACCTGGCCCTGACGCGCTTCATCGGTGACTCCAAGGTCCTGAAGTGGAGCAGCAAGCAGTTCTCGGAGGTCCAGGCGCTGCCCTCACGCGGCTCCATGATCATGCAGCCCTTCTCCTTCAGCGACCGGCACTACCTCGCCCTGGGCAGCGACTACACCTTCTCGCAGATCTACCTCTGGGACGAGGAGAAGAAGCTGTTCGACAAGTTCAAGGAGGTCTACATCCAGGCGCCGCGCTCCTTCACCGCCGTGTCCACTGGCCGCCGGGACTTCATCTTCGCCTCCAGCTTCAAGGGCAACACGCAGATCTACGAACACACGCTGGTGGACCTGAGCCTGTGAGACACGCAGGCTGGAGTCGCTGCAGCGGCGTCTGGTGAAATCCcaggttgagagagagagagagagagagagagagacttcctTGTGGCATTATCAGGTATTTATTCCTAAACGATATGATAATGatgtttcatgcatttttacTAAGGTTTTAAACTGACAGCTCCAGTAGCACTTTTAACCATTTGATACGCACACGTAACGATAGCTAAGCAACCTGCGAAAACGTCCCGAGCAGAAGACCATTCAAAGTCATCGTGCATTTTCATCTTAACGGACAGGGCGAGGAAAATGTCTTCTGAAGTTCTGTCAGACTCCAGTGGCCACTTCGGTGAAATATCTTGCCTTATCTCTACAAGGGTTGTGTGTCTAAATCTCTGCGGCATCTCCATCCCATCGCACCGTATCGGACACTCTCTCTGGAGGAAGGCTGGAAGAGAGCCATTCACCATTTTGCATAGTTCACAGACACGCATTTCACGTCTGCATCGAGTGATGGCTGAAGCTCTTTCACAGATGCTCTCCTGCCTGACATTCCTGTATATTATAACACAAAACAGATCCCTGCGACCAGCGAGTAAAAAGTCTGGAGCCTGTTTTTGCAAAGCTTCTGTACtacagacacagggacacactaAGCCACTTACACTTCCCAATTTAGGGCCCAAGAAAGTATCAAAAGAGCAGATAACTCTAGCTCCTACAGGTAAGTAGAGACTAATGAAAGCCCTTCTTTGTTTTGGTTCGGTGAGAATAGttgtatttaattcagtaaTTGACCTGTAATCAGGATTGTTTGCCTGCGGTCTATATGATTgcaatgacaataaaaacagcagtaaGAGCTCCTATAACCACCTCAGTAAATTACAATGACAAGTCTAAACACACAAAACTGCGTCGACTATAGTGTTTATACTGTTGTGTCTGCGTTCCTTTACGATCACATTATTCAGAAATAATTAGTTTGGCAGAACAGTGGCACCGGACACGCGTCGCCACAGTAATGCTGCCACTCCGACACGCTCGTCCCACATGCATGACCTCGTCTGGATGGTGTCATTTGTACGTATGAAattggtaaaaacaaaaactgaaatttaCATCCaatcttccaaaatatatgaaggtttatttaaatgcatttcaggaacaggataacatgtatttaaacactGACGTCCAGCCCTCATCACTCTGTGGGGCTTGAGGAATTTGTAAAGCCCTAGTTTATACTCATTATATACTTCATGACATACCATTTTGTCCACATGTATGTTAAAGTTGCGTATTGCATGGGGTGTGGCTGCCAAATACGTAGTGTATCCAAATCAATTAAAGGACCAATCACAGATTCAATCAAAGGCAAGAAAAGCATATAAATATTTCCCCTATTAAACCTATATCTTCTGCAAAACATAATATAAGTAAGATACTGCAGTAACAGaaccaaatatttgtatttaaaaccataatGAACTGAATATTAAGCCTGTGAAAACAGAACGAAGTATGATAGTAAAGGATGTAAGTGTCCTGATAGTTCAGATGACAAGAACActtcagtacattttaaattattagctacaaatgtgtttttctgtcaaTACCCTGATGGTGCAACTATAGTTTCCACAAATACAAGTACTGGTCCAGGTCActgacaacacacaacacacacaaaaaaagacacacGGCTGTAATGTGTCAACTGCCAGGGACAGCCTTTGTAAACCAAAAGGCCAGTCCGGTCATCAGCAGCGCCTCTGTACGGGGAGCCATGGCCTGTCCACGGGGTTCTATTGCCTGAGAGGGACAGGTCCATCTCACAGTATTGAAATGAACACGCTCTGCCTGTGCTCCACACCCCGCACAGATTTCCActcatgtttgtattgtttcacAGCACACTGAAAGCCAGTAACATTTCACCCACAATCAACAGAAAAAAGACGCAGCGGGTGAGAGCATGCCCCCCAGGCCCGGATGCGAGAGCATTCCGGTTCGGGACAGATTTAAAACTTTGAATAATCTCTAGTAGAACTACTACTGCTGTTCCTGGTATGACAAGTACTCGGTGGTATTGTATCCAGTAGTACTCCTTAATCAAATATGCAAGTTTATGACATGTAGATTTCTTTTTGTATCATTACAGTATGTTATAATCTTATCGAATGTTAGCCTTGTAGATATACTTGAAGATGACAATAAAAATGCTACTGATTATCAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017990 True 3993 mRNA 0.48 8 32143816 32151676

Neighbor

gene id symbol gene type direction distance location
AMCG00017992 ccdc149b,LOC105908379,LOC107671163,LOC107748825 coding downstream 3365 32123130 ~ 32140451 (-)
AMCG00017991 dhx15,LOC107691839,LOC107699613 coding downstream 32352 32088147 ~ 32111464 (-)
AMCG00017988 NA coding downstream 249010 31892473 ~ 31894806 (-)
AMCG00017987 ppargc1a,LOC106577610,LOC106608616 coding downstream 260138 31862729 ~ 31883678 (-)
AMCG00017986 NA coding downstream 428383 31692327 ~ 31715433 (-)
AMCG00017993 sepsecs coding upstream 4095 32155771 ~ 32163981 (-)
AMCG00017994 NA coding upstream 12387 32164063 ~ 32173862 (-)
AMCG00017999 zgc:136353 coding upstream 48077 32199753 ~ 32210966 (-)
AMCG00017998 NA coding upstream 82175 32233851 ~ 32248178 (-)
AMCG00018006 LOC108437089,LOC103038323,LOC107561515,LOC107738333,LOC107691852 coding upstream 195819 32347495 ~ 32360816 (-)
G94665 NA non-coding downstream 315016 31828459 ~ 31828800 (-)
G94655 LOC100709447,LOC101481844,LOC102214071,LOC102780160,LOC106514855,LOC108234835 non-coding downstream 402157 31741224 ~ 31741659 (-)
G94622 NA non-coding downstream 521438 31621600 ~ 31622378 (-)
G94600 NA non-coding downstream 626780 31516832 ~ 31517036 (-)
G94598 NA non-coding downstream 685562 31457879 ~ 31458254 (-)
G94747 NA non-coding upstream 40507 32192183 ~ 32196606 (-)
G94791 NA non-coding upstream 193574 32345250 ~ 32346583 (-)
G94927 NA non-coding upstream 638103 32789779 ~ 32790688 (-)
G94936 NA non-coding upstream 696590 32848266 ~ 32848466 (-)
G94543 NA other downstream 1485323 30627988 ~ 30658493 (-)
AMCG00017972 dcaf10 other downstream 1547399 30585729 ~ 30596417 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 2870648 29269235 ~ 29273168 (-)
G94172 NA other downstream 3267893 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 3999227 28098905 ~ 28144589 (-)
AMCG00018000 slc1a1 other upstream 108031 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 120018 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 133809 32285485 ~ 32308080 (-)
G94835 NA other upstream 303409 32455085 ~ 32456410 (-)
AMCG00018021 ank2,LOC106577504,LOC106608576 other upstream 449513 32601189 ~ 32605751 (-)

Expression


Co-expression Network