AMCG00017993 (sepsecs)


Basic Information

Item Value
gene id AMCG00017993
gene name sepsecs
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32155771 ~ 32163981 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017993
ATGCGCACTAACGGTGCTGCCACGATGAACAGTGAGAACTTCTCCCTGAGCGAGAGGCTGGTGTCGGCCTCCTACGTGCGCCAGGGATCGCAGGCGCGCCGTGGACATGAGCAGCTGATCCGACTGCTGCTGGAGCAGGGAAAGTGTCCTGAGGAGGGCTGGAGCGAGAGCACCATCGAGCTCTTCCTCAATGAGCTGGCCTTGATGGACAGCAACAACTTCCTGGGCAACTGTGGGGTCGGGGAGCGGGAGGGCAGAGTGGCGTCCGGCCTGGTCGCCAGACGGCACTACAGGTTGATCCACGGGATCGGACGCTCAGGGGACATCGCCGCCGTCCAGCCGAAAGCCGCGGGATCCAGCCTCCTCAACAAGATCACGAACTCAGTGGTGCTGGATATCCTGAAGGTGGCAGGTGTGCGAAGTGTCTCCAGCTGCTTCGTGCTTCCCATGGCGACTGGGATGAGTCTGACTTTGTGCTTCCTGACGCTGAGGCACCGGAGACCCAAAGCCAAGTACATCATCTGGCCGAGGATCGACCAAAAGTCCTGCTTCAAAGCCATGGTCACGGCAGGGTTCGAGCCGGTGGTGGTGGAGAACGTGCTGGAGGGAGACGAGCTGCGCACAGACCTGCAGGCCGTGGAGAGCCGGATCCAGGAGCTGGGGCCGGACAGCGTCCTGTGCGTCCACTCCACCACCTCCTGCTTCGCCCCGCGGGTCCCCGACAGGCTGGAGGAGCTGGCCCTGATGTGTGCGAAGTATGACGTCCCGCACATCGTGAACAACGCCTACGGAGTCCAGTCCTCCAAGTGCATGCACCTCATTCAGCAGGGGGCCCGTGTGGGCAGGATCGATGCCTTCGTACAGAGTCTGGACAAGAACTTCATGGTGCCAGTAGGGGGCGCCATCATCGCTGGGTTCGACGAGGCCTTCGTGCAGGAAATCAGCCGCATGTACCCAGGGAGGGCGTCCGCTTCCCCGTCTCTGGACGTCCTCATCACCCTCCTCACGCTGGGCACCGGCGGCTACAGGAGGCTGCTGAAGGAGCGCAAGGAAATGTACACCTTCCTCGCGGAGGAGCTGAAGACGCTGGCTGCGGCCCACGGGGAGCGGCTGCTACACACCCCGCACAACCCCATCTCTCTGGCAATGTCGCTCGGGAGCCTCGAGAAACAGAACCAGAAGGCGGTCACTCAGCTGGGCTCCATGCTGGGCTTCATGTCCCACTCCGCGCACTACCCCTGTCCGTACCTCAACGCCGCCTCCGCCGTGGGCATCACCAGGGACGACGTGGCCCTCTGTGTGAAGAGGCTGGACAAGTGCCTGAGGAGCTTCGGCAGGGAGAAGAGAGACCAGAGCGGCCCTGAGGAGCCCAGCATCACGGAGTCCAGCGTCACAGAGGCCGACGCCACGGAGCTCAACACTACTGAGCCCTGTGCGGCCGACACTGAGGGAGACAGCAGCCACTGA

Function

symbol description
sepsecs Predicted to enable tRNA binding activity. Predicted to be involved in selenocysteine incorporation. Predicted to act upstream of or within selenocysteinyl-tRNA(Sec) biosynthetic process and translation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2D. Orthologous to human SEPSECS (Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase).

NR:

description
PREDICTED: O-phosphoseryl-tRNA(Sec) selenium transferase isoform X1

GO:

id name namespace
GO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016785 transferase activity, transferring selenium-containing groups molecular_function

KEGG:

id description
K03341 SEPSECS; O-phospho-L-seryl-tRNASec:L-selenocysteinyl-tRNA synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017993 True 1467 mRNA 0.63 12 32155771 32163981

Neighbor

gene id symbol gene type direction distance location
AMCG00017990 NA coding downstream 4095 32143816 ~ 32151676 (-)
AMCG00017992 ccdc149b,LOC105908379,LOC107671163,LOC107748825 coding downstream 15320 32123130 ~ 32140451 (-)
AMCG00017991 dhx15,LOC107691839,LOC107699613 coding downstream 44307 32088147 ~ 32111464 (-)
AMCG00017988 NA coding downstream 260965 31892473 ~ 31894806 (-)
AMCG00017987 ppargc1a,LOC106577610,LOC106608616 coding downstream 272093 31862729 ~ 31883678 (-)
AMCG00017994 NA coding upstream 82 32164063 ~ 32173862 (-)
AMCG00017999 zgc:136353 coding upstream 35772 32199753 ~ 32210966 (-)
AMCG00017998 NA coding upstream 69870 32233851 ~ 32248178 (-)
AMCG00018006 LOC108437089,LOC103038323,LOC107561515,LOC107738333,LOC107691852 coding upstream 183514 32347495 ~ 32360816 (-)
AMCG00018009 NA coding upstream 216531 32380512 ~ 32381489 (-)
G94665 NA non-coding downstream 326971 31828459 ~ 31828800 (-)
G94655 LOC100709447,LOC101481844,LOC102214071,LOC102780160,LOC106514855,LOC108234835 non-coding downstream 414112 31741224 ~ 31741659 (-)
G94622 NA non-coding downstream 533393 31621600 ~ 31622378 (-)
G94600 NA non-coding downstream 638735 31516832 ~ 31517036 (-)
G94598 NA non-coding downstream 697517 31457879 ~ 31458254 (-)
G94747 NA non-coding upstream 28202 32192183 ~ 32196606 (-)
G94791 NA non-coding upstream 181269 32345250 ~ 32346583 (-)
G94927 NA non-coding upstream 625798 32789779 ~ 32790688 (-)
G94936 NA non-coding upstream 684285 32848266 ~ 32848466 (-)
G94543 NA other downstream 1497278 30627988 ~ 30658493 (-)
AMCG00017972 dcaf10 other downstream 1559354 30585729 ~ 30596417 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 2882603 29269235 ~ 29273168 (-)
G94172 NA other downstream 3279848 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 4011182 28098905 ~ 28144589 (-)
AMCG00018000 slc1a1 other upstream 95726 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 107713 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 121504 32285485 ~ 32308080 (-)
G94835 NA other upstream 291104 32455085 ~ 32456410 (-)
AMCG00018021 ank2,LOC106577504,LOC106608576 other upstream 437208 32601189 ~ 32605751 (-)

Expression


Co-expression Network