AMCG00017995 (LOC107558400,LOC106943316)


Basic Information

Item Value
gene id AMCG00017995
gene name LOC107558400,LOC106943316
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32212179 ~ 32217730 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017995
GGCGACACATGTGCGAAAGCGTTAGGAAGCGGACGGTATGTGTTGCTTTTTCGTTTATAAAACCACCGTAGAGTTTGCTGGTAGTTTTATTCTGTTCATCGCTTCATTCAGAAAGGAGATAAGCGAGCTGCTGTCAGACGGAGCCGCAGTGCTCCGGGCTGGAGGGATATATGATCGACTCTGATTGCATTGAGATCTGTGATACGCACTCGGGGGGAGCAGAGCCATGTCTTCTGAGGATGCTGGGCAGGGGCCCGGGCAGGGACACCACAGCGCTGTCcaggagggacagacagagtcCCTGTCCAAGCGGCAGCAGAAGAAGCTGCTGAGACACAAGCAGTGGGAGGAACAGAGGGATCTGCGTAAGCAGAGGCGGAAGGAGAGGAAGCAGAAACGCAGGCAGGAGCGGCAGGAGGGCGTGGAGGGGGAGGAGGCGGCCGGCAGGAAGCGTCTGCGCAGGGAGGCCGAGCCCAGCTCTCTGCGCCTGGTGGTGGACTGCAGCTTCGACAGCCTCATGGCACTGAGGGATGTGAAGAAGCTCCACAAGCAGATTCAGAGGTGCTACGCTGAGAACCGGAGAGCTGTGCGCCCTGTCCAGTTTTACTTGACCAGTCACGGGGGGCAGCTGAAGCAGAACATGGACGAGAACGACAAAGGATGGGTGAACTGGAAGgaCATCAGCATCCGGTCGGAGCACTTCACTGAGATCctgaaggaggaggagctggtgtACCTGACCTCTGACTCGCCCAACGTGCTGCAGGAGCTGGACGAGACCAAGGCCTACATCATCGGGGGCCTCGTGGACCACAACCACCACAAGGACCAGGGGCTCCAGCACGCCCAGCTCCCGCTCAGCAGCTTCGTGAGGATGAACAGCCGCAAGGTGCTGGCGGTCAATCACGTGTTCGAGATCATGCTGGCCTACCTGGAGAAGAAGGACTGGCGAGAGGCTTTCTTCACCATCCTGCCCCAGAGGAAAGGGGCCGTGCCAGTGGGGCAGGAGGGCTCCCCCCCGGAGCAGGAGAGGGAGCGGGACTCTGACAGCGAGACGGAAACGGCGGAGACGGGCACGCCCAGCACAGGCCAGCGGGGGACACCGGGCGGAGAAGCGGGCGGAGAGGCGGGCGAGGCAGCGGGACACGACCCCGCTGGGGGGTCCCACACCGAGGGCACCGCAGCATAGGCACCAGGCGATGGACGTCTGTTTAAATTGAGgatacttttttaatttgacaagGAAGAGCTCaaattgagtttttttgttttatttatatttttttctctgatgTTTAGAGACCAGGGCTCGATCGGGCTGTTGTGTCAGTCAGGAGGGCTAGAGAGTTAAAGAATGGAATCAAACCCCCACAGCTCCTGCAGCGTGCTATAAATCTGTGTCCTGCTCTCCGTCTGCTGGCTGAccaggtgcatgctgggagaagGCCGCCAGCCACTCTTCTTGGGGACGCTGTATGGAGCGCTGTGGCTCCACTCCTCTCATTGTTTTTATCTTGGAGGTGCGTCTTCAGTTATTGCCTTTGCAGTCGAGCATCATTTCTGTTGGTTGTAAATTTGCAAAGTGTTCATATCAGTATTAAAAGTGGAATTGATGCCACCCTCGCTGTGTGAAGCCTTCAATTACAAACTCGGGTCCTCAATAATGTCCTCCGATAGCCTGGACTGTCCTACCCACACTAACGCTGAC

Function

NR:

description
PREDICTED: tRNA methyltransferase 10 homolog A-like

GO: NA

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017995 True 1708 mRNA 0.57 8 32212179 32217730

Neighbor

gene id symbol gene type direction distance location
AMCG00018002 NA coding upstream 17981 32191749 ~ 32194198 (+)
AMCG00017996 NA coding upstream 25618 32181702 ~ 32186561 (+)
AMCG00017989 NA coding upstream 88806 32115161 ~ 32123373 (+)
AMCG00017985 NA coding upstream 466198 31740568 ~ 31745981 (+)
AMCG00017981 NA coding upstream 537142 31659901 ~ 31675037 (+)
AMCG00017997 NA coding downstream 979 32218709 ~ 32228691 (+)
AMCG00018001 NA coding downstream 19681 32237411 ~ 32238888 (+)
AMCG00018003 NA coding downstream 35100 32252830 ~ 32285111 (+)
AMCG00018005 rap1gds1 coding downstream 99966 32317696 ~ 32345960 (+)
AMCG00018010 NA coding downstream 173512 32391242 ~ 32402757 (+)
G94739 NA non-coding upstream 46882 32164819 ~ 32165297 (+)
G94713 NA non-coding upstream 119135 32091420 ~ 32093044 (+)
G94681 NA non-coding upstream 312499 31898502 ~ 31899680 (+)
G94668 NA non-coding upstream 347977 31859994 ~ 31864202 (+)
G94664 NA non-coding upstream 444331 31767636 ~ 31767848 (+)
G94763 slc1a1,LOC107691854,LOC107561518 non-coding downstream 16041 32233771 ~ 32237191 (+)
G94792 NA non-coding downstream 129732 32347462 ~ 32350363 (+)
G94858 NA non-coding downstream 299393 32517123 ~ 32535900 (+)
G94899 NA non-coding downstream 529094 32746824 ~ 32762583 (+)
G94906 NA non-coding downstream 577025 32794755 ~ 32797498 (+)
AMCG00017978 NA other upstream 1380312 30819869 ~ 30831867 (+)
G94275 NA other upstream 2761832 29433412 ~ 29450347 (+)
AMCG00017910 NA other upstream 3565429 28631892 ~ 28646750 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 4514800 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 5214727 26992891 ~ 26997452 (+)
AMCG00018012 NA other downstream 189699 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 243568 32461298 ~ 32466636 (+)
G94857 LOC106577504,LOC103385245,LOC108267515 other downstream 289960 32507690 ~ 32601449 (+)
AMCG00018027 NA other downstream 571711 32789441 ~ 32793604 (+)

Expression


Co-expression Network