AMCG00017998


Basic Information

Item Value
gene id AMCG00017998
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32233851 ~ 32248178 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017998
CACCGACGCACACAGacaacacgcacacacgcacacacacacacacacacacaccagatcacacacacacacacagcacagcacagcacacacacacaccagatcacacacagcacagacacacacacacaccagatcACACACCAGATCACGCACAGCGCTCTCACACCTCCACAGCACAGCGGTCTGGGATCAGCATCGGAGCCCCCGCAGCTCTCACACCTCCACAGCACCGCGTCTGGGTCGGTCCATTAGCGCTGCTATTTATTCGTCTGGCTGCGGAAGAGCCGAGCGATGGGGAAGAGAGCCGAGCAGAGATGCGATTTCAAGAGCTTCTTGAAGAAGAACTGGCTGCTGCTCAGCACCGTGGCCGCCGTGGTGTTAGGTATCGGGCTGGGCGTTCTGGTGCGCGAGTATGGCTCCCTCTCTCAGCTGGACAAGTACTACTTTGGCTTTCCCGGGGAGATCCTGATGCGCATGCTCAAACTCATCATCCTGCCCCTCATCATCTCGAGCATGATCACAGGTGTGGCGGCGCTGGACTCGGAGGTGTCTGGCAGGATCGGCCTGCGTGCCGTCGTGTATTATTTCTCCACCACACTCATCGCTGTCATCCTGGGCATCGTGCTGGTGATGACCATACAACCCGGCGTGTCCCAGAGCGCCGAGGACATCGACAGGACTGGCTCCACCCCCGAAGTCACCACCGTGGATGCCATGCTGGACCTCCTCAGGAACATGTTTCCAGAGAATCTGGTTCAGGCTTGCTTCCAGCAGTACAAGACCAGGCGCTCGGAGATAAAGCCGCCCAGCAGACCTGAGGGGAACAGCACCACCGCTGCCACTAACGTGACCAAGGACTACAAGATTGTGGGCCTGTACTCGGATGGCATCAACGTGCTGGGTCTCATCGTGTTCTGCCTGGTCTTCGGGCTGGTCATCGGCCAGATGGGCGAGAGGGGACGCATCCTGGTGGAGTTCTTCGACGCGCTGAACGAAGCCACAATGAAGATCGTGCAGGTCATCATGTGttACATGCCCATCGGGATCATGTTCCTCATCGCTGGCAAGATCATCGAAGTGGACGACTGGGACATCTTCCGCAAGCTGGGGCTCTACATGGTGACCGTGCTGAGCGGACTGGCCATTCACGCGATCGTCTGCCTGCCGTTGCTGTACTTCATCTTTGTGAGAAAGAACCCGTTCACGTTCGCGCTGGGGATGGCCCAGGCGCTGGTCACCGCTCTGATGATCTCCTCCAGCTCAGCCACCCTGCCTGTGACCTTCCGCTGTGCAGAGGAGAACAACCAGATTGACAAGAGGATCACGCGCTTCGTGCTGCCTGTTGGCGCCACCATCAACATGGACGGCACCGCCCTCTACGAGGCGGAAGGGCTGGTTGGCTACCTTCTTGTGCAGCACTGGGGGGGCAAGGGAGGGATGGATTACAGGCACAGCATTACCGCCACGGCGGCCAGCATCGGAGCGGCGGGGGTCCCGCAGGCCGGCCTGGTCACCATGGTCATCGTCCTAACGGCGGTGGGCCTGCCAGCGAATGATGTCACTCTTATCATCGCCGTGGATTGGCTGCTAGATCGCTTCCGCACCATGATCAACGTGCTGGGAGACGCCTTCGGGGCCGGCATCGTGCAGAAGCTCTCCAAGAAGGAGCTGGAGCGCATGGACCTGACGTCTGACGTGGACGTGGTCAACCCCTTCGCCCTGGAGACCACGATGGACGAGGACGAGTGCGAGAAAAAGTCCTACGTCAACGGGGGCTTCACTGTGGATAAGAGCGACTCCATCTCCTACACGCAGACCTCCCAGTTTTAGCCGAGGGGCGGGCAGGCGGCAGGTACTGTATGGAGTCGGACATGACTGTGGCTGTGGTACTGTGATGCGGAGGACTATTAGAagaatgaatgtaaaaaaaaatatctaaacaagcaaacaaataatccCAGAGTTCAGCAATAGCTGcgatattttctattttaaaagacTCACATCCCTGATGTTTGAGGCACTGTGCGTTTGTGCCAAAAAGGAAAGGGGAATTCAGGTTATATGAACGCTTGCTCATACAGGCCCCTCTTTTATAAATGTGGCCACATTGGTGTTTAAAGATGCGGCATTTCACGGAGACGCAGGCCTTTCACAGAGGTTAGGAATAGACCCGCTTTGTGATGCTTCGTTTCTGTGTACAAGCAGCTGTGGAAAGTGTAGTGGCCATTCTTTGCTGAAACACAAAAGATTTCACACATTGATGTGCCATGCCATTGTCACACGCTACCATATCTGCCTCCATCCTGGGCTCCTGTCCTGTGCCTGTGGGCATTGAGCATCCTGGTGTCTTTCTGTGTGCCGTGTGCCAAAACCGTGGACTTGCATCAGTCTGACCGCCCAACTGTGTTCTGTGCACCTCCCGTGACTCACCGCATGGATACCACTACCGATCGACCTAAACCGTTCAAGGTCACCGAGCCGAGACCCACTGGAAGAGACTGTGAGGATCTGAGCATGTGAAATGGGTCAGGCACCTTTTAACTGACGCTAAGCTTTCGTGCCAAATGAGATGACGCAGCTACAAAAAGGGATCTTTGTCCATCtgtcatttttatatgtagCATGAACCCATCGGCGAAAGGGAAATTATTACTTAGTGTGAAAGAAAATAGccttaaattaatgttttttggcactgatttaatgattttttcCTGCTTCAGAATGATGCTCCTTAACCAACGCTGTAATCCAGTGTAGTTGCGCTATAAAGCTCGCTTCGCGGTCCGCAGGTGCAGTTCGTTGTGATGTGTTGACCTCGCACTGTGCTTAATAGGGACTGAAACGCCACACCGCAGGCCCGGCCGGGATGTGTGGCAGACATATCTCTGTACTATAACCACATGAGATACTTAAACAGTCTCTTCTCAATTATGGATTctaattaaaactataaaaaaccTGCCTCAATCAGCACTTAGGGTTTTACAATGCATGTAGATACCCACTGCCCCCCGCCCCCTTTCATTCTagagtataaaatataaatatatatgcgtAGACGCTCAGGCAGTGGGGACTTGGCGGCACAGGGCTGGTTTCTTAGGCCATTCATTGCACTTAAATGGAATAAATAAGAAACTAAATACATAGATATCAGGAAATAGAAAAGGAGGATTCTGCTGGGGGTACTGACAGAAGCTCTACCCAAACATCACAGCTGCAGATCTCTGGCCGGACCGTTCGATCGAAGGCTGCTGTTGCACGGTTCACTGTATCGCCCTGATGCGACTCCAGCGCACGGACCTGCCGCTCGGCTCGGCTCCAGCGCCGGGCCTGGCGGCTCCGTGGGGGgtgtctgttttaattgaacTCCATGTTCCGAAACCAGAAATCGCTTGAAgctattttttcatatatatttttgctcaAAGGGATTTTCATAATAATAtccaaaaaattaataaatatcaatCTGATCATTTAAATCTTCATAATGTTTGATACGTAGATGCTAGATCATTCttttataacattgtttcattgtttgttatattttaaccTTGGGGACAACAAGGCCAGCAGCATTTATTGCCAATTATTGTTTAAAGAGATGGTACTGTTTAGTGTGTTTCACTAGCGCTGCCCTCTCACTGcagaccagagagagagagagagagagagagagaggccactTCAAACCTGCACACGGACACACCGTGATCACTCAGACCAATTAATTCCTTGTGGGAACAAGAAGACCCAGACctacatgcacaaacacacacccccacacacactcactcagagGTTAAGGATAGTAGGTGCTTTTTGACCTCGGAATGGCAATACTGTAGATATAAGTGATCAGGGGCGATATCCTCCTCgcctctgtccctccctcttttAAACTCTGCCGTGCCATTCAGAGTCATTGCACTTTCCTCTGGCAGCACCAGTCCAGTCCTGCTGCCTGCGCTTGGGCTGCCGTGTGACACATGTGCTGAAGCTGCTCACTGgcaagaacaaaacaagcagagaaacagagagatgTTCAGGCTGCATTGTGTGTCGGTCAGAGGTTGTCAGTCTTGCCCCCGGGGGTCCACATCCCTGCTGGTGTGATAGGGAGCTTAATTCGCCAAAGCGCACAGGTGTGAAACACAGGGCTGTGCTCACTGAGACGGCGCATGAGCCAATGAGACTTCAGAGCCCAAATTGAAAGAGCGAGTCTCTGTGGCTCTTCAGAGCAGCCCCCAGTGTTCAAGCCAAGCACCCCCTAACGTCATcgatctgattggctgattcGCTGCATGAATTCAGTTCTTCTCTGCAGGTTAAACTACCGATCAGGCCTCCTTCCGGCCTTGAGGTGTGAGAGGCCTTACATATCATGTGATGTGTCTCTGAGTGATAATCTCAGTTGGCTGATTGAACAAttgtgaaaaaaactaaaacaaagactCTGTGGCCCTGCAGGAACTGgcgattaaatcaaaatgttaaccATTGACCTCTGACCCACGTGCTAATCGTAAGCTACAAACCTGCATGCACTTCAAAGCGCTTACATTGACGAGTAAAAAACTGAAGCATCTTAACAAAACGACTTGATTGAGTACCGAGTTCTGTTCTGTCGTTCCCTGTTAGCGGAGGGTGAATGTGGGGTTCATTTAAGCCCAGTCTGGGACTGAAACTCTGCtgcggacggacggacggaccaTTGTCAAACTTACTGTGCCAAACgtatgtcacttttttttttttatatatcttgaTATGCTCTGTATACTTCTGATGAAGCACATACTGTACAATATTAATGGGCAGTAATgaatattatacatgtatacattgatatgtaattatgtatgtgtTCAAAAACAATACTGGATGTATTAGactgataataaattaaacctaAATCCTGAA

Function

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05612 SLC1A1, EAAT3; solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017998 True 4938 mRNA 0.51 15 32233851 32248178

Neighbor

gene id symbol gene type direction distance location
AMCG00017999 zgc:136353 coding downstream 22885 32199753 ~ 32210966 (-)
AMCG00017994 NA coding downstream 59989 32164063 ~ 32173862 (-)
AMCG00017993 sepsecs coding downstream 69870 32155771 ~ 32163981 (-)
AMCG00017990 NA coding downstream 82175 32143816 ~ 32151676 (-)
AMCG00017992 ccdc149b,LOC105908379,LOC107671163,LOC107748825 coding downstream 93400 32123130 ~ 32140451 (-)
AMCG00018006 LOC108437089,LOC103038323,LOC107561515,LOC107738333,LOC107691852 coding upstream 99317 32347495 ~ 32360816 (-)
AMCG00018009 NA coding upstream 132334 32380512 ~ 32381489 (-)
AMCG00018008 NA coding upstream 133372 32381550 ~ 32387686 (-)
AMCG00018015 NA coding upstream 176847 32425025 ~ 32429565 (-)
AMCG00018016 NA coding upstream 213416 32461594 ~ 32478852 (-)
G94747 NA non-coding downstream 37245 32192183 ~ 32196606 (-)
G94665 NA non-coding downstream 405051 31828459 ~ 31828800 (-)
G94655 LOC100709447,LOC101481844,LOC102214071,LOC102780160,LOC106514855,LOC108234835 non-coding downstream 492192 31741224 ~ 31741659 (-)
G94622 NA non-coding downstream 611473 31621600 ~ 31622378 (-)
G94600 NA non-coding downstream 716815 31516832 ~ 31517036 (-)
G94791 NA non-coding upstream 97072 32345250 ~ 32346583 (-)
G94927 NA non-coding upstream 541601 32789779 ~ 32790688 (-)
G94936 NA non-coding upstream 600088 32848266 ~ 32848466 (-)
G94543 NA other downstream 1575358 30627988 ~ 30658493 (-)
AMCG00017972 dcaf10 other downstream 1637434 30585729 ~ 30596417 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 2960683 29269235 ~ 29273168 (-)
G94172 NA other downstream 3357928 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 4089262 28098905 ~ 28144589 (-)
AMCG00018000 slc1a1 other upstream 11529 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 23516 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 37307 32285485 ~ 32308080 (-)
G94835 NA other upstream 206907 32455085 ~ 32456410 (-)
AMCG00018021 ank2,LOC106577504,LOC106608576 other upstream 353011 32601189 ~ 32605751 (-)

Expression


Co-expression Network