AMCG00018020 (LOC105907237,LOC101472930)


Basic Information

Item Value
gene id AMCG00018020
gene name LOC105907237,LOC101472930
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32656030 ~ 32665115 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018020
CGGCCCCTGGAACCCATACAGGAATGCTGCAGCAATTCCGCCCACTcgtccttctcctcctccacctcctgctcttcctccgCCTTCACGTCATCATCCTGGTGGTTCTGCCCGTCCGGGTGGCCGAGCGGCCGCTCCTGCTGCCAGTGCGTCCTGCGGCTGCTGCTCGGCCTCTACTTCCTGTCCTTCATTTGctcttttgttgtgtttctctcCGTCAATTCTGCAGCCAAGTGCACGGAGAATGCGAACTCAAAGAGTCAGTCACGCGAGTCTGAACCCAACCAGTCCGCCAGCTCCTCGGTGCAGTTGGAGACCTGGGGCTTATGGGCAGTGAACAGCAGTGACGCCCGTCTCCTCTGTGTTTCAGCTCGTAAGCAGGAGATCATTAAAGTCACCGAGCAGCTGATCGAGGCCATCAACAGTGGGGACTTCGAAGCCTACACGAAGATCTGCGATCCTGGCCTGACTTCCTTCGAGCCCGAGGCCTTGGGCAACCTGGTCGAGGGCACTGACTTCCACCGGTTCTATTTCGAGAACGCCCTGTCCAAGAGCATCAAGCCCATCCACACCATCATCCTGAACCCCCACGTGCACCTGATCGGGGAGGACGCCGCCTGCATCGCCTACATCCGGCTGACGCAGTACCTGGACAGCAGCAGCATGCCCAAGACCATGCAGTCTGAGGAGACGCGCGTGTGGCACCGCCGGGACGGCAAGTGGCAGAACATCCACTTCCACCGCTCCGGCTCCCCCACTGTGCCCGTCAAGTAA
>TU118408
TGACGCCCGTCTCCTCTGTGTTTCAGCTCGTAAGCAGGAGATCATTAAAGTCACCGAGCAGCTGATCGAGGCCATCAACAGTGGGGACTTCGAAGCCTACACGAAGATCTGCGATCCTGGCCTGACTTCCTTCGAGCCCGAGGCCTTGGGCAACCTGGTCGAGGGCACTGACTTCCACCGGTTCTATTTCGAGAACGCCCTGTCCAAGAGCATCAAGCCCATCCACACCATCATCCTGAACCCCCACGTGCACCTGATCGGGGAGGACGCCGCCTGCATCGCCTACATCCGGCTGACGCAGTACCTGGACAGCAGCAGCATGCCCAAGACCATGCAGTCTGAGGAGACGCGCGTGTGGCACCGCCGGGACGGCAAGTGGCAGAACATCCACTTCCACCGCTCCGGCTCCCCCACTGTGCCCGTCAAGTAAGgtgacGGAGCTGCCACGCCCTCCTCCCGGAGctccgcccccccgcccccccgggCCGCTCTGTCCAGCCCCGTCTCCATCTCTTCCATCCCTTTCTTCATTGTTTACACTCCGCCGGTGGAAACGCTCTGTGctgaaataaaagacagaaatgcaaaaaaaaaaaaaaaaagtaattattctCACCACGTCGCGTGACGCTTAACGTGCTCATCTTCAGGACGGCGATCAGAGAAGTCATTTCTCTCGTTTCCTTTTCTTTGCCgctgtgtaaatgtttaatttagatTACTGTATATCTGCTAGGGTTGATATTGGTATGCAAGATCTGTGTTTACTAGCTGCGTTTGCTTATCGGAGTCCTCTTTAAAACTTACAAACCAGAAGGACCTTTAGCAATATGATCTGTGAAatactgtctgtctgttcatATCATATGAACCAGGCTGGGCCCTCAGCGGCCCTCAGCGCGTGGCCGCCCTGTCCTTCCTTCGTCTGATTCCCCTCAACCGCAGTCTTCAGGTCTCGGACTCGGCCGCTACGCGCAGAGCCATGACTCTTAAAATAAACCGCGCTTGCTTCTCTGGTGATGTTGTACAGACGTTGTGATTGCAGTAAACTGCTATAATTGCTTAACGAGGAAGATTAGggctttatttttgtgaacTCCGTTTTCCAGCTTCGTTCATTTGCTGTATACCAGTATATAACCGTACGCCGGACTATACAAAGTAAAACTAACAGGAATAATGATGTTAACAAAGGGAATTTTTGCTACAATCTTTGCCTATAACTAATCACGTATAATCTTCAcgttttgattattattgaatGTAAGATACGTAACACCATCGGATCAACGCAGAACTGACTGTTTTAATTCACGCCGTGatgtttttcatatttgctGATTTGTGAACCGAtccttttgattttctttcaatgGTTGTTTTTCGttaggttttgttgttttttttacttggtGTAATTGATACGTATTCCTGCCAATTCTGGGGTTTGGTTTCTCTCTCCACTCTTGTTTCGGTCGTGATGATACCTGCGGGGCTGCGCATGAAATCTCAGTCCGTGTGGCTTTAACTGGACAGCCTGTAGTTCAGTCCTGGCAACGATCTTTATATTAatgctttgtattatttcaacTTCTGTGTTAGTATCtcgatttaaaacaatatttacgatgatgttgatgttttataaggacaaaaaaaacaagtgaaataGTTCAGTCCAATCTGATTCGTCCTCACCTGGTTTGACTCATATCTATAGTTTTTGTAGATAGACTTGCGCATTTGGGTGTATTTGAGTCATGTCATTTTGCCAATAAAAGAGTtgtgtggaaacaaaaatacaataacttttctttttctgttgaCGGCTCGTATGGCACCAGTGTGTTTTCAATAAAGATGAATCTGTCAATGATGAATAACTGTGGCGCTCGGCATGTTAGTGTCTGACGTGGTGTCGTGGTGTTGGGGGGCTACAGTCATCCACTGGTCTTCCGGGGGggactcgctctctctcacagctAGACGGGACCCCCCCTCACGCTTCTGTAAAGCTGCCGTTCCCCACGGGACTCTGTGTACGACCTTCTCGCCATGAGCTGCAGCAATGGACTGATGGATATCTTTCAATGATAATAAACTGTGTGATTTCTTC

Function

NR:

description
PREDICTED: calcium/calmodulin-dependent protein kinase type II delta 1 chain

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005516 calmodulin binding molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018020 False 774 mRNA 0.60 4 32658429 32665115
TU118408 True 2116 lncRNA 0.47 4 32656030 32661641

Neighbor

gene id symbol gene type direction distance location
AMCG00018016 NA coding downstream 177178 32461594 ~ 32478852 (-)
AMCG00018015 NA coding downstream 226465 32425025 ~ 32429565 (-)
AMCG00018008 NA coding downstream 268344 32381550 ~ 32387686 (-)
AMCG00018009 NA coding downstream 274541 32380512 ~ 32381489 (-)
AMCG00018006 LOC108437089,LOC103038323,LOC107561515,LOC107738333,LOC107691852 coding downstream 295214 32347495 ~ 32360816 (-)
AMCG00018023 camk2d1,LOC107732596,LOC105907237 coding upstream 15472 32680587 ~ 32684608 (-)
AMCG00018025 NA coding upstream 23266 32688381 ~ 32690871 (-)
AMCG00018024 NA coding upstream 29845 32694960 ~ 32713623 (-)
AMCG00018022 LOC106523896,LOC108436153,LOC103388877 coding upstream 102130 32767245 ~ 32776080 (-)
AMCG00018029 LOC103388830 coding upstream 130769 32795884 ~ 32819447 (-)
G94791 NA non-coding downstream 309447 32345250 ~ 32346583 (-)
G94747 NA non-coding downstream 459424 32192183 ~ 32196606 (-)
G94665 NA non-coding downstream 827230 31828459 ~ 31828800 (-)
G94655 LOC100709447,LOC101481844,LOC102214071,LOC102780160,LOC106514855,LOC108234835 non-coding downstream 914371 31741224 ~ 31741659 (-)
G94622 NA non-coding downstream 1033652 31621600 ~ 31622378 (-)
G94927 NA non-coding upstream 124664 32789779 ~ 32790688 (-)
G94936 NA non-coding upstream 183151 32848266 ~ 32848466 (-)
G94887 NA other downstream 3346 32648464 ~ 32652684 (-)
AMCG00018021 ank2,LOC106577504,LOC106608576 other downstream 50279 32601189 ~ 32605751 (-)
G94835 NA other downstream 199620 32455085 ~ 32456410 (-)
AMCG00018007 NA other downstream 347950 32285485 ~ 32308080 (-)
AMCG00018004 NA other downstream 379658 32271694 ~ 32276372 (-)

Expression


Co-expression Network