AMCG00018029 (LOC103388830)


Basic Information

Item Value
gene id AMCG00018029
gene name LOC103388830
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 32795884 ~ 32819447 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018029
ATGGAGAGCTTCGCTTCTCCCGAGACCCGCAGCATGGAAGCGTGGCTGGACGACCACCTGGACTTCGCCCGCTCCTACTTCGTGCGGAAAGCGACCCGGGAGATGGTCAATGACTGGTTCGCCGAGAGAGTCCACTCCATCCCGGCCTCAAAGGACAGCGGCAGACCGGTGTTGGAGCCGAGCCCCGGGCAACAGGGCGGCCGACCGGACAGCGCCCCGCCCGGCACTCCCACCCGCAAGATCTCCGCCTCGGAGTTCGACCGGCCCCTGCGGCCCATGGTGGTGAAGGACGCCGAGGGCTCCCTGACGTTCCTCAGCGATGCCCAGCGGGAGCCCCTGAGCGCCCAGCACTCACAGGGCGCCGAGGGCCCGGCCGCTGACCAGTGCTCCCGGCTGCTGCAGCTGGTCAGGGACATCTCCAGCCACCTGGACGTACCGGCGCTCTGCCACAGGATCTTCCTGCACATCAACGAGCTGATCGACGCCGACCGCTACTCCCTGTTCCTGGTGTGCGAGGACAGCTCCAACGAGAAGTTCCTGGTCAGCCGGCTGTTTGACCTGGCGGAGGGATCCACGCTGGAGGAGGCCTCGAACAGCCGCATCCGCCTGGAGTGGGGCAAGGGCATCGTGGGGCACGTGGCCTCCACCGGCCGGCCGCTCAACATCAGAAACGCCTACGAGGACCCCCGGTTCAATGCGGAGGTGGACCAGATCACGGGGTACAAGACTCAGAGCATCCTGTGCATGCCCATCAAGAACCACAGGGAGGAGGTTGTTGGTGTTGCTCAAGCAATAAAcaagaaatgtggaaaaaacggCACCTTCACCGAACAAGATGAAAAGGATTTCTCAGCCTACCTGGCGTTCTGCGGGATCGTCCTCCACAACGCGCAGCTGTACGAGACGTCCAGACTGGAGAACCGGAGAAACCAGGTGCTGCTCGACCTGGCCAGCCTGATCTTCGAGGAGCAGCAGAGTCTGGAGGTGCTGCTGAAAAAGATTGCAGCCACGATCCTGTCCTTCATGCAGGCGCAGGCGTGTACCGTGTTCATCGCGGACGGGGAGTCCATGCACTCCTTCTCCAGTGTGTTTCACATGGACCACGAGGAGCTGGGAGAGTCTGCGGACGTCCCGAAGAGCCGGGACTGTGACGTCAGTAAAATCAACTACATGTATGCGCAGTACGTGAAGAACACCCAGGAGCCGCTGAACATCGGGGATGTGGCCAGAGACCGCAGGTTCCCCTGGACAAATGAAAACGCAGAATATGCAAGCGAGCAAATAAAAAGTTTGCTCTGCAGCCCGATTAGAAATGGGAAGAAGGATAAAGTCATAGGGGTTTGCCAGCTGACAAACAAGATGGACGAAGCCACCGGGAAGATCAGAGCCTTCAACAGGAACGACGAGCAGTTCCTGGAGGCCTTTGCGATCTTCTGCGGCCTGGGCATCCAGAACACGCAGATGTACGAGACGGTGGAGCGGGCCATGGCCAAGCAGGAAGTGACTCTGGAGGTGAGCGCAGCAgggatggagggggggggggcaggactGGCCACGGCCGTGCCCTCCGCCCAGTCTCTCCGGCTGCTGGACTTCAGCTTCAGTGACTTCGATCTCTCAGATGCTGAGACCACCCAGGCTGCCATTCGCATGTTCACCGACCTCAACCTGGTGCAGAACTTCCAGATGAAGTACAAGAGCCTGTGCCAGTGGATTCTGAGTGTGAAGAAGAACTACCGGAAGAACGTGGCGTATCACAACTGGAGGCACGCCTTCAACACGGCGCAGTGCATGTTCGCGGTGCTGAAGTCTGGCCGGCTGCAGAGTAATTTAAATGATCTGGAAATCCTGGCCCTGATGATTGCAACGCTGAGCCATGACCTGGATCACAGAGGAGTCAATAACGCCTACATCCAGAGGAGTGATCACCCGCTGGCGCAGCTCTACTGCCACTCCACGATGGAGCACCACCACTTCGACCAGTGCCTCATGATCCTCAACAGCCCAGGTAACCAGATCCTGAGTGGCCTGTCCCTGGAGGAGTACCGGGCCACCCTGAAGATGATCGAGAGGGCTATTCTGGCCACAGACCTGGCTCTCTACATGAAGTCAATGCTGATGACTGCGTGTGACATCTCTGCCATAACCAAGCCCTGGCCCGTGCAGCGCAGGATTGCGGATCTTGTTGCCACTGAGTTCTTCGAGCAAGGAGACAAGGAGAGACGGGAACTCAACGTGGAGCCCATCGACCTGATGAACAGAGAGAAGAGGGACAAGATTCCCAGCATGCAAGTGGCTTTCATCGACGCCATCTGTGTCCAGCTGTACGAGacCCTGGCTGGGATGTCGGAGTCCTGCTCACCCCTGCTGGAGGGATGCAGGAGGAATCGGCAGAACTGGAAACACCTGGCAGAACAAGGTGAGAAAAAGATGGTGAACGGAGCCTCCTAA

Function

NR:

description
PREDICTED: cGMP-specific 3',5'-cyclic phosphodiesterase-like isoform X2

GO: NA

KEGG:

id description
K13762 PDE5; cGMP-specific 3',5'-cyclic phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018029 True 2451 mRNA 0.59 19 32795884 32819447

Neighbor

gene id symbol gene type direction distance location
AMCG00018022 LOC106523896,LOC108436153,LOC103388877 coding downstream 19804 32767245 ~ 32776080 (-)
AMCG00018024 NA coding downstream 82261 32694960 ~ 32713623 (-)
AMCG00018025 NA coding downstream 105013 32688381 ~ 32690871 (-)
AMCG00018023 camk2d1,LOC107732596,LOC105907237 coding downstream 111276 32680587 ~ 32684608 (-)
AMCG00018016 NA coding downstream 317032 32461594 ~ 32478852 (-)
AMCG00018028 NA coding upstream 17184 32836631 ~ 32847899 (-)
AMCG00018032 NA coding upstream 32357 32851804 ~ 32864532 (-)
AMCG00018031 NA coding upstream 47874 32867321 ~ 32889902 (-)
G94927 NA non-coding downstream 5196 32789779 ~ 32790688 (-)
G94791 NA non-coding downstream 449301 32345250 ~ 32346583 (-)
G94747 NA non-coding downstream 599278 32192183 ~ 32196606 (-)
G94665 NA non-coding downstream 967084 31828459 ~ 31828800 (-)
G94655 LOC100709447,LOC101481844,LOC102214071,LOC102780160,LOC106514855,LOC108234835 non-coding downstream 1054225 31741224 ~ 31741659 (-)
G94936 NA non-coding upstream 28819 32848266 ~ 32848466 (-)
AMCG00018020 LOC105907237,LOC101472930 other downstream 130769 32656030 ~ 32665115 (-)
G94887 NA other downstream 143200 32648464 ~ 32652684 (-)
AMCG00018021 ank2,LOC106577504,LOC106608576 other downstream 190133 32601189 ~ 32605751 (-)
G94835 NA other downstream 339474 32455085 ~ 32456410 (-)
AMCG00018007 NA other downstream 487804 32285485 ~ 32308080 (-)

Expression


Co-expression Network