G89837


Basic Information

Item Value
gene id G89837
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 342615 ~ 402466 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112047
aaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctatcattttaatggtaggtgtattttagcagtgagacacagaataacaacaacaaaatccagaaaaacgcatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagatgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112047 True 379 lncRNA 0.41 2 342615 402466

Neighbor

gene id symbol gene type direction distance location
AMCG00017385 NA coding upstream 170868 109675 ~ 171747 (+)
AMCG00017389 NA coding downstream 19043 421509 ~ 440294 (+)
AMCG00017390 NA coding downstream 452812 855278 ~ 887994 (+)
AMCG00017392 lbx2,LOC105028271,LOC106604581,LOC106611617 coding downstream 862976 1265442 ~ 1267334 (+)
AMCG00017399 NA coding downstream 1331966 1734432 ~ 1736022 (+)
AMCG00017398 NA coding downstream 1355920 1758386 ~ 1768848 (+)
G89832 NA non-coding upstream 113891 227251 ~ 228724 (+)
G89819 NA non-coding upstream 162680 177246 ~ 179935 (+)
G89818 NA non-coding upstream 166112 175050 ~ 176503 (+)
G89784 NA non-coding upstream 299550 42802 ~ 43065 (+)
G89896 NA non-coding downstream 343288 745754 ~ 745999 (+)
G89898 NA non-coding downstream 475445 877911 ~ 878653 (+)
G89901 NA non-coding downstream 512537 915003 ~ 915213 (+)
G89908 NA non-coding downstream 568177 970643 ~ 971264 (+)
G89913 NA non-coding downstream 709488 1111954 ~ 1112159 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 130679 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 244218 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 2284954 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 4190336 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 4260159 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 6327272 6729738 ~ 7188643 (+)
G90877 NA other downstream 7265717 7668183 ~ 7671850 (+)

Expression


Co-expression Network