G89883


Basic Information

Item Value
gene id G89883
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 463208 ~ 463423 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112108
cttccgacagcacttgtaatattagtcctctatccctgctagatagcacttcagcttattatgctcctcacgttcttgattgttttcctccttgctccctttcccgtagccctagtctgtaaccctacatcttgacagcacttagctttcaccgtccaggatgtaggaagtctcttactgtacttgtgtaaattgtaattggaatttgtaaaatgt

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0140103 catalytic activity, acting on a glycoprotein molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112108 True 216 lncRNA 0.42 1 463208 463423

Neighbor

gene id symbol gene type direction distance location
AMCG00017391 NA coding upstream 472458 935881 ~ 936676 (-)
AMCG00017393 pcgf1,LOC107589114,LOC107710472,LOC107660820 coding upstream 811809 1275232 ~ 1289433 (-)
AMCG00017394 LOC106604596,LOC105028255,LOC106611619,LOC103363938,LOC104951404 coding upstream 975105 1438528 ~ 1447581 (-)
AMCG00017395 tlx2,LOC106611621,LOC106604594 coding upstream 1092105 1555528 ~ 1561186 (-)
AMCG00017396 NA coding upstream 1136165 1599588 ~ 1600290 (-)
G89870 NA non-coding downstream 16123 385671 ~ 447085 (-)
G89803 NA non-coding downstream 291458 166138 ~ 171750 (-)
G89885 NA non-coding upstream 38744 502167 ~ 528797 (-)
G89892 NA non-coding upstream 169493 632916 ~ 633178 (-)
G89893 NA non-coding upstream 228147 691570 ~ 691851 (-)
G89895 NA non-coding upstream 257878 721301 ~ 721711 (-)
G89900 NA non-coding upstream 447973 911396 ~ 911648 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 111422 160054 ~ 351786 (-)
G89804 NA other downstream 357323 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 2138360 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 2247879 2711302 ~ 2841894 (-)
G90400 NA other upstream 4079352 4542775 ~ 4544760 (-)
G90501 NA other upstream 4694961 5158384 ~ 5221021 (-)
G90502 NA other upstream 4759050 5222473 ~ 5223047 (-)

Expression


Co-expression Network