G89901


Basic Information

Item Value
gene id G89901
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 915003 ~ 915213 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112126
gtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgaccccttcaacttagtacttggtggcaaaacccttgttggcaatcacagaggtcaga

Function

GO:

id name namespace
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU112126 True 211 lncRNA 0.34 1 915003 915213

Neighbor

gene id symbol gene type direction distance location
AMCG00017390 NA coding upstream 27009 855278 ~ 887994 (+)
AMCG00017389 NA coding upstream 474709 421509 ~ 440294 (+)
AMCG00017385 NA coding upstream 743256 109675 ~ 171747 (+)
AMCG00017392 lbx2,LOC105028271,LOC106604581,LOC106611617 coding downstream 350229 1265442 ~ 1267334 (+)
AMCG00017399 NA coding downstream 819219 1734432 ~ 1736022 (+)
AMCG00017398 NA coding downstream 843173 1758386 ~ 1768848 (+)
AMCG00017402 NA coding downstream 957414 1872627 ~ 1875428 (+)
AMCG00017403 NA coding downstream 961463 1876676 ~ 1894462 (+)
G89898 NA non-coding upstream 36350 877911 ~ 878653 (+)
G89896 NA non-coding upstream 169004 745754 ~ 745999 (+)
G89837 NA non-coding upstream 512537 342615 ~ 402466 (+)
G89832 NA non-coding upstream 686279 227251 ~ 228724 (+)
G89819 NA non-coding upstream 735068 177246 ~ 179935 (+)
G89908 NA non-coding downstream 55430 970643 ~ 971264 (+)
G89913 NA non-coding downstream 196741 1111954 ~ 1112159 (+)
G89938 NA non-coding downstream 425688 1340901 ~ 1341295 (+)
G89983 NA non-coding downstream 665770 1580983 ~ 1589805 (+)
G90042 NA non-coding downstream 1013929 1929142 ~ 1934784 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 703067 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 816606 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 1772207 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 3677589 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 3747412 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 5814525 6729738 ~ 7188643 (+)
G90877 NA other downstream 6752970 7668183 ~ 7671850 (+)

Expression


Co-expression Network