G89908


Basic Information

Item Value
gene id G89908
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 970643 ~ 971264 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112134
taaacataCTTTTCCCCAAAAAATTAATTGGTTCAGAGTAATATACCAGGAATGGAACTACTGAATgttataaaaagctttttaagcGATGTATTTTCCGTTTTTGCATAAAATGTCTAATTTAAAATCccaaataatgcaaaaatgtagtgaatgtactgaataaaataaaatgaaaagtgattTTAGGAGGACTGCACATTTCATACAGTTTTGTTTACCAAAGgaatacaatttcaattaaataatgtaatagatttgctgtattgtatataaaagtgtgtaatgtttattcagtattttaacattataatgATTGACTTAAGAGGGTACTACCTCAACagaattttcaaataattacaaatttgtACTTATATGTAAAATGTCAACATTTGCAGTGTATAAATATAGTGCTGCCATTTATAATAAGGgtttttaatagtattttttggATCTTTGTataacataattgtattttttttgcattttacatttggGAGTCAATAAGCTCTAAGCATTGTTTGCCAAAAGGCAAgtgttgtaaataataatatccatAAGTTTTCTGAAGTTGTATTGttaaatgtttcattgttttttgtttggaaaGAGTTAAATGAAA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112134 True 622 lncRNA 0.26 1 970643 971264

Neighbor

gene id symbol gene type direction distance location
AMCG00017390 NA coding upstream 82649 855278 ~ 887994 (+)
AMCG00017389 NA coding upstream 530349 421509 ~ 440294 (+)
AMCG00017385 NA coding upstream 798896 109675 ~ 171747 (+)
AMCG00017392 lbx2,LOC105028271,LOC106604581,LOC106611617 coding downstream 294178 1265442 ~ 1267334 (+)
AMCG00017399 NA coding downstream 763168 1734432 ~ 1736022 (+)
AMCG00017398 NA coding downstream 787122 1758386 ~ 1768848 (+)
AMCG00017402 NA coding downstream 901363 1872627 ~ 1875428 (+)
AMCG00017403 NA coding downstream 905412 1876676 ~ 1894462 (+)
G89901 NA non-coding upstream 55430 915003 ~ 915213 (+)
G89898 NA non-coding upstream 91990 877911 ~ 878653 (+)
G89896 NA non-coding upstream 224644 745754 ~ 745999 (+)
G89837 NA non-coding upstream 568177 342615 ~ 402466 (+)
G89832 NA non-coding upstream 741919 227251 ~ 228724 (+)
G89913 NA non-coding downstream 140690 1111954 ~ 1112159 (+)
G89938 NA non-coding downstream 369637 1340901 ~ 1341295 (+)
G89983 NA non-coding downstream 609719 1580983 ~ 1589805 (+)
G90042 NA non-coding downstream 957878 1929142 ~ 1934784 (+)
G90070 NA non-coding downstream 1031774 2003038 ~ 2004606 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 758707 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 872246 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 1716156 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 3621538 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 3691361 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 5758474 6729738 ~ 7188643 (+)
G90877 NA other downstream 6696919 7668183 ~ 7671850 (+)

Expression


Co-expression Network