G89909 (nanos1,nano1,LOC105894108,LOC106611616)


Basic Information

Item Value
gene id G89909
gene name nanos1,nano1,LOC105894108,LOC106611616
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 968543 ~ 971428 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112135
atttgataagctgtttatttctgtagtgaattcatattttttaattctgcacTGCAGCATACAGAAAATagtgacaaaatataaataacaaaattcaacagttttttattttatttcttaattaaaaactttaattctatttttcttaaacataatCCATTCTCTTTCATTTAACTCtttccaaacaaaaaacaatgaaacatttaaCAATACAACTTCAGAAAACTTatggatattattatttacaacacTTGCCTTTTGGCAAACAATGCTTAGAGCTTATTGACTCccaaatgtaaaatgcaaaaaaaatacaattatgttatACAAAGATccaaaaaatactattaaaaacCCTTATTATAAATGGCAGCACTATATTTATACACTGCAAATGTTGACATTTTACATATAAGTacaaatttgtaattatttgaaaattctGTTGAGGTAGTACCCTCTTAAGTCAATcattataatgttaaaatactgaataaacattacacacttttatatacaatacagcaaatctattacattatttaattgaaattgtattcCTTTGGTAAACAAAACTGTATGAAATGTGCAGTCCTCCTAAaatcacttttcattttattttattcagtacattcactacatttttgcattatttggGATTTTAAATTAGACATTTTATGCAAAAACGGAAAATACATCgcttaaaaagctttttataacATTCAGTAGTTCCATTCCTGGTATATTACTCTGAACCAATTAATTTTTTGGGGAAAAGtatgtttatacatatacatatacctccccctcccccccccaaaaaaaagtgtctatatatatatatatatatatatatatatacgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtgtgtaattgCTTTTGTCATTTTACTGCGATGATATAAAGCACTCCCTGTTTCCACTACCGTGACTGGTACTAACTGGAgatttaaatatacttaaatGTACCCTAACAATGGGAAAATACAACACGGATACGTATAGCGTACTGATGAGAATCCAGTGTTCTACCTTCCATCGGGTATGTAAACATTAGGAGTacctttgatttgttttttcaatttaaaaagcaagaatTCAGGAGGCATAGCAGGCAACACAGTATTATGAAGGGCTTAATTTGGCAATGCAACTGTTCATACATATACGAACTTACTCAAAGCACTAATGGTCAACAGAGCACCCTTTGTGTTAGGTGGTTATTCCTTTCTTACTGATATATTAAATGCCACGGCCGGCTTTATTTAGAACTTGCGATAATACGTTGCTTTAGGCTGAAAAGGCGACTGAAATAAATGCCCAAAACATTGAAAAGTAACAGGATTGAAATACAACTTCagtattaaataatacagaattatttcttctcttttaaaTAGGTTGAACAAAACTTTGGTTCATCATTCAAGCAATAGGAAGGGTAAACTTAGTTTACAAATTATAATCTAACGAATGCAACTGGGAATTTATTCCATCTCCcgtatttaaaattaaaattaaaaaatggttaACAGCTATTCCCCCCATCAGTTAAAATGCCACCGTTTATTCACAAGTCTTAATTATGAATGAAGGTGCAtctataatattattaacagtCCAACACTGCGTACTAATATTAAATGGGGGAAAATCGCAAAATAAAAACGAATAAGcaaataatgtatacatgtataaaacaggTTCCAGCTTTTGGAAAGTAATATTGTTCTCTTCTTTATTGTATCCATAAATAAGATAATATCGTAGCAGTTAGGACTAGGGAAAGCCGTAATTGAAACAGTCATCTGAAAAATGTTCAGTGCAATTTcgttattttattgtatttatttagaatatTTTCAGTCGCTTACCGCCTACTGCCCTCCCTCCCTTCAGTGGCCGTTGGGCTGGCTGATCTTTGGAAAGCGGgcagtattttattgtatgggCATTATCGCCATTGGCACTGCATAGGGGACAAGTGTAAGCCCTGAGAATGGGGCAAACAACCCTTCCGTCTGGTGTCTTCAGCACATGAGAACCGTACACTTCCTCCGGCGCCCCGTTATTCCTACAGAACACGCATATCTTCGGTTCCTGCTTATTCCTTGGCGTCGGTTTCCTCATTTTCCTCTCCATACCAAACAGGTCGAAACCAGAGAAGCTACTTGCAAAGCTGGAGTCCCTGTCTTGCGGGGGGACGCCACCGCTTTGGTCCTGGAAAGGGCTGAAAATGGAAAACCGCTCCTTTAAGTCGAGGATGGAAGTAGGTGGAGGACTCGAAGAGGGGCAACAGCAGTCCAAGTGCCCACCTTCCCCATTGCCCCCGATTACACAAGAGCAAGCCGGGGTATCGTCCAAGCCTAGAGTCGCTTTCAGAGACTGTGTGATGGAGTTCTGACTTTGGGGAacgctgtttttgttgtttttcgtTACCAACGTTGAAAGACCCAGATAGTCATTCCAAAAATTAAAAGTGTAGTCATAAGAGGTGCGAGCGTTCAAATAGTTATGATTTAGAAAATCCATGCTTTCTTCTTTAAAgtgttctgtttctttgttgttgttttttacgaATAGAATCCcttggatttttcttttaagtatttgtttttctgctgcagAAGAGCTGAAGTGCAGTTTGTTCCAGGGCTTTCCGTGCCTCTAACTGCCTGCTGGAGAGCCTGGTGTTTTTAATGCTCCTGTGGGATGAGAAAGCTTGCAGGCGGGCGGGGTTTTTCTTTCAAGCCAAGTTTATGAGTAGGTTGAGCACATTGCTTTCTATAGCGAAGGGGTGCAATGGAAAACACGGACCAGATCCCTTCCTCTGGGAAGACATGATGGTTCTCCACG

Function

symbol description
nanos1 Predicted to enable mRNA binding activity and translation repressor activity. Involved in germ cell development and germ cell migration. Located in germ plasm and perinuclear region of cytoplasm. Is expressed in blastomere; cerebellum; hindbrain; midbrain hindbrain boundary; and primordial germ cell. Human ortholog(s) of this gene implicated in spermatogenic failure 12. Orthologous to several human genes including NANOS1 (nanos C2HC-type zinc finger 1).

NR:

description
PREDICTED: nanos homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112135 True 2886 lncRNA 0.36 1 968543 971428

Neighbor

gene id symbol gene type direction distance location
AMCG00017391 NA coding downstream 31867 935881 ~ 936676 (-)
AMCG00017387 NA coding downstream 498113 360455 ~ 470430 (-)
AMCG00017393 pcgf1,LOC107589114,LOC107710472,LOC107660820 coding upstream 303804 1275232 ~ 1289433 (-)
AMCG00017394 LOC106604596,LOC105028255,LOC106611619,LOC103363938,LOC104951404 coding upstream 467100 1438528 ~ 1447581 (-)
AMCG00017395 tlx2,LOC106611621,LOC106604594 coding upstream 584100 1555528 ~ 1561186 (-)
AMCG00017396 NA coding upstream 628160 1599588 ~ 1600290 (-)
AMCG00017397 NA coding upstream 629163 1600591 ~ 1601058 (-)
G89900 NA non-coding downstream 56895 911396 ~ 911648 (-)
G89895 NA non-coding downstream 246832 721301 ~ 721711 (-)
G89893 NA non-coding downstream 276692 691570 ~ 691851 (-)
G89892 NA non-coding downstream 335365 632916 ~ 633178 (-)
G89885 NA non-coding downstream 439746 502167 ~ 528797 (-)
G89912 NA non-coding upstream 67844 1039272 ~ 1039471 (-)
G89939 NA non-coding upstream 369444 1340872 ~ 1341089 (-)
G89940 NA non-coding upstream 387256 1358684 ~ 1358981 (-)
G90017 NA non-coding upstream 856252 1827680 ~ 1831528 (-)
G90066 LOC107678491 non-coding upstream 953780 1925208 ~ 1926851 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 616757 160054 ~ 351786 (-)
G89804 NA other downstream 862658 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 1630355 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 1739874 2711302 ~ 2841894 (-)
G90400 NA other upstream 3571347 4542775 ~ 4544760 (-)
G90501 NA other upstream 4186956 5158384 ~ 5221021 (-)
G90502 NA other upstream 4251045 5222473 ~ 5223047 (-)

Expression


Co-expression Network