G89938


Basic Information

Item Value
gene id G89938
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1340901 ~ 1341295 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112165
ttccagaccccagaCCCCGACTCCCGTGCGCTCGGAATGAGCACCTCTgtcgtcaggagcctgtggtctgaaaagaagaccgcctccgaagacatggcggtcctctccagtggcttactgaggaggacgagatctatcctggagaaggaggagccagaagaactcacccaggtgaacaagGGGACCAGGTCCTGACCTGCgtcgcagagttcaaagtcctccacgaACGCAGCGAGTTCCATGCTGGATCTATTGTTGCGGGGCTTACTccggtctacatccctcagagcacagttgaaatcacctgaaatgataactggtaaggtgccgatcaggagcgggcgtagctgagggagaaagaggactctctctctctggctggtgggggcatagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112165 True 395 lncRNA 0.57 1 1340901 1341295

Neighbor

gene id symbol gene type direction distance location
AMCG00017392 lbx2,LOC105028271,LOC106604581,LOC106611617 coding upstream 73567 1265442 ~ 1267334 (+)
AMCG00017390 NA coding upstream 452907 855278 ~ 887994 (+)
AMCG00017389 NA coding upstream 900607 421509 ~ 440294 (+)
AMCG00017385 NA coding upstream 1169154 109675 ~ 171747 (+)
AMCG00017399 NA coding downstream 393137 1734432 ~ 1736022 (+)
AMCG00017398 NA coding downstream 417091 1758386 ~ 1768848 (+)
AMCG00017402 NA coding downstream 531332 1872627 ~ 1875428 (+)
AMCG00017403 NA coding downstream 535381 1876676 ~ 1894462 (+)
AMCG00017411 htra2,LOC106589831,LOC101079124,LOC104960364 coding downstream 582182 1923477 ~ 1929454 (+)
G89913 NA non-coding upstream 228742 1111954 ~ 1112159 (+)
G89908 NA non-coding upstream 369637 970643 ~ 971264 (+)
G89901 NA non-coding upstream 425688 915003 ~ 915213 (+)
G89898 NA non-coding upstream 462248 877911 ~ 878653 (+)
G89896 NA non-coding upstream 594902 745754 ~ 745999 (+)
G89983 NA non-coding downstream 239688 1580983 ~ 1589805 (+)
G90042 NA non-coding downstream 587847 1929142 ~ 1934784 (+)
G90070 NA non-coding downstream 661743 2003038 ~ 2004606 (+)
G90144 NA non-coding downstream 1120587 2461882 ~ 2504164 (+)
G90149 NA non-coding downstream 1150612 2491907 ~ 2528801 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 1128965 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 1242504 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 1346125 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 3251507 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 3321330 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 5388443 6729738 ~ 7188643 (+)
G90877 NA other downstream 6326888 7668183 ~ 7671850 (+)

Expression


Co-expression Network