G89939


Basic Information

Item Value
gene id G89939
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1340872 ~ 1341089 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112166
CCTGGTCCCcttgttcacctgggtgagttcttctggctcctccttctccaggatagatctcgtcctcctcagtaagccactggagaggaccgccatgtcttcggaggcggtcttcttttcagaccacaggctcctgacgacAGAGGTGCTCATTCCGAGCGCACGGGAGTCGGGGtctggggtctggaagctcaacacctctctgcttgATGACCCTC

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU112166 True 218 lncRNA 0.59 1 1340872 1341089

Neighbor

gene id symbol gene type direction distance location
AMCG00017393 pcgf1,LOC107589114,LOC107710472,LOC107660820 coding downstream 51439 1275232 ~ 1289433 (-)
AMCG00017391 NA coding downstream 404196 935881 ~ 936676 (-)
AMCG00017387 NA coding downstream 870442 360455 ~ 470430 (-)
AMCG00017394 LOC106604596,LOC105028255,LOC106611619,LOC103363938,LOC104951404 coding upstream 97439 1438528 ~ 1447581 (-)
AMCG00017395 tlx2,LOC106611621,LOC106604594 coding upstream 214439 1555528 ~ 1561186 (-)
AMCG00017396 NA coding upstream 258499 1599588 ~ 1600290 (-)
AMCG00017397 NA coding upstream 259502 1600591 ~ 1601058 (-)
AMCG00017400 NA coding upstream 363857 1704946 ~ 1707277 (-)
G89912 NA non-coding downstream 301401 1039272 ~ 1039471 (-)
G89909 nanos1,nano1,LOC105894108,LOC106611616 non-coding downstream 369444 968543 ~ 971428 (-)
G89900 NA non-coding downstream 429224 911396 ~ 911648 (-)
G89895 NA non-coding downstream 619161 721301 ~ 721711 (-)
G89893 NA non-coding downstream 649021 691570 ~ 691851 (-)
G89940 NA non-coding upstream 17595 1358684 ~ 1358981 (-)
G90017 NA non-coding upstream 486591 1827680 ~ 1831528 (-)
G90066 LOC107678491 non-coding upstream 584119 1925208 ~ 1926851 (-)
G90093 NA non-coding upstream 713750 2054839 ~ 2055363 (-)
G90098 NA non-coding upstream 737951 2079040 ~ 2079244 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 989086 160054 ~ 351786 (-)
G89804 NA other downstream 1234987 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 1260694 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 1370213 2711302 ~ 2841894 (-)
G90400 NA other upstream 3201686 4542775 ~ 4544760 (-)
G90501 NA other upstream 3817295 5158384 ~ 5221021 (-)
G90502 NA other upstream 3881384 5222473 ~ 5223047 (-)

Expression


Co-expression Network