G90042


Basic Information

Item Value
gene id G90042
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1929142 ~ 1934784 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112288
GAAATCTGGCAACCTTCTTATGAATTTATTAGGAGGTATACTACACTATAATTACAGACCCTGTTTATACAGTCGCACCACCACAAAATAATTTGTCTACAGTTaactttttgaatattttattttatgtttgcatttgcaTAAAGTTAATGGCTCAGTAGAAAAAGACTACAAACTATTTTGCGGAGCAGCGTGATCACACCTTGGTGTCTTTCCTAGCATCATTTCGGAGCTGAAAGTACGTGACCCTATCTTCCAAGATGTGACCCATGGAGTCCTGATTCACAAGATAATCATGGGTTCCCCAGCCAACAGGGCTGGGATGAAACCTGGTGATATAGTTGTGGAGATCAATGGGAAAACGGTGAAGACTGCAGAAGACATCTACAACACGGTGCTAACTTCAGACAGCATTAACATGGTTGTAAAACGAGGGCCTGATCTGCTCATGCTGCACATGACTCCTGAGTTTGTAGAGTGAAATATACAGGGCAGCACAGATGGCCTAACAAACAGGAAACCAGAAACCACACTGCCCTTGAAATGGAGCCTACACCGAGTTGCTTTCCCCACTCAAGGCTTTTTTctcaatttgtatgtattaaagggttattttaagaaaattacTTGAAAGAATATGGTATGAAAGGATGTGTTTTGCTCAGAAGTAATTATCAGACTGTGAGCCTTGGTGAATTTGATCAGTATTGCATTATAACTGTCTTACGACTCACTTCCTGCTCTCCTTTGTGTATGTAAATTGAGATTGAGAGAAACTGTACTGAACAAATGGTACTAgacttgtatgtatgtatgtatgtatgtatgtgtgtgtgtgtgtatatatatatatataatatatatatatatatatatatacacacattcacaatatGATCtgatatttagaaatatttttcatatttcctcAGGTGTTATGGGAGTCCGAAGACTAGGCAGACCAAaaattattcttaaaaataaattcctgGCCTGTTGAGTGTTTGCCATGTATtggaatataatttaaaattgtcaCACAATGCAAAACTACTATCAACTttagttaaaatacatttttctttgtcatgGAAACCATGAAATTTAGTAGACAATAACTGTCCTTTACTCTGTATATTCTGCTCTACCCATTGGTTACCATAatgcacttatttttattttatttttatttaccatACAAACTCAGTTGCAGATCTCACTAAAATCATAcaattccacttttttttttacattgtttacatgTGTATACTCTTATTTACATAATCCTTCCCAATAAATTGTACTAATGCTCTTTTATCTAAAATGATTTTGCTTGCTTTTTCAGATGTGCATCAATGTGTATTGGGTATTGcaatgtttaaagaaatgtatttcctACTGGAGTATTTCAATGTACATGTAAAAATTGATAATGCTACTTGGACAAATAATGGTAATGTTAAAGATTTTAGCATTTTGCTGTATTTATCAAAGTAACTGTGAAAGTTTAAAGGTGTAATATAACAAGACTGcatatgtatacaaaacaaatgtgttttttaattaaatttattttcacttgagAATTTAATTGGACCACATTTTGCACTAGAAATTACTCAAACATCATTTTCTtggtacaaacaaaaaaattgaaatgctgACGATACTATGTGAGCAGATTTCAGTGCAGTGCTGTTCACCCGAGTCCACAGAGAAGGCCGCACCTTGGCACAGCAACTCGATCAGCATAGCAAGATCTACTTTAACAATCCCCTTTTTACCTCTCTAAACAGTCAGTTAATCAGTCCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112288 True 1814 lncRNA 0.34 2 1929142 1934784

Neighbor

gene id symbol gene type direction distance location
AMCG00017403 NA coding upstream 34680 1876676 ~ 1894462 (+)
AMCG00017402 NA coding upstream 53714 1872627 ~ 1875428 (+)
AMCG00017398 NA coding upstream 160294 1758386 ~ 1768848 (+)
AMCG00017399 NA coding upstream 193120 1734432 ~ 1736022 (+)
AMCG00017392 lbx2,LOC105028271,LOC106604581,LOC106611617 coding upstream 661808 1265442 ~ 1267334 (+)
AMCG00017405 NA coding downstream 112893 2047677 ~ 2049406 (+)
AMCG00017412 NA coding downstream 173107 2107891 ~ 2129512 (+)
AMCG00017413 fgfr3 coding downstream 493109 2427893 ~ 2460519 (+)
AMCG00017415 LOC103458261,LOC105909588 coding downstream 638705 2573489 ~ 2598970 (+)
AMCG00017416 NA coding downstream 711490 2646274 ~ 2649483 (+)
G89983 NA non-coding upstream 339337 1580983 ~ 1589805 (+)
G89938 NA non-coding upstream 587847 1340901 ~ 1341295 (+)
G89913 NA non-coding upstream 816983 1111954 ~ 1112159 (+)
G89908 NA non-coding upstream 957878 970643 ~ 971264 (+)
G89901 NA non-coding upstream 1013929 915003 ~ 915213 (+)
G90070 NA non-coding downstream 68254 2003038 ~ 2004606 (+)
G90144 NA non-coding downstream 527098 2461882 ~ 2504164 (+)
G90149 NA non-coding downstream 557123 2491907 ~ 2528801 (+)
G90248 NA non-coding downstream 1302661 3237445 ~ 3237726 (+)
G90284 NA non-coding downstream 1963034 3897818 ~ 3898125 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 1717206 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 1830745 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 752636 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 2658018 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 2727841 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 4794954 6729738 ~ 7188643 (+)
G90877 NA other downstream 5733399 7668183 ~ 7671850 (+)

Expression


Co-expression Network