G90066 (LOC107678491)


Basic Information

Item Value
gene id G90066
gene name LOC107678491
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1925208 ~ 1926851 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112321
atCTGAGATGTGTAATTTTGGTTGATTCCCATGAATCAtgaataaagtacaatatattctACATGTTAGAAAATTAGAATATATCTCCGtacctgtgtttgttttactttttttttttgctcatctttatcaatgatTTTGCCAATCATTGTGGAGGTGACAGGTTTctagctatttttatttttttattttttatcttttattatttttttgtatccttcacaaatgtatattgtttgtttattgtgtatttgctgTATCATTTAATGGGAAACAAAATGTCATGTTTATGTTTCATCTTTTCAGTTTGGCAACTCTGGTGGGCCCCTTATCAATCTGGACGGGGAGGTGATCGGTATCAATACCATGAAAGTAACAGCAGGCATATCCTTTGCTATTCCTTCAGACCATCTCAGAGAGTTCCTCAGCAGAATGGCCGAAAATAAAAAATCTTGGTTTGGTCGCTCAGAATCCAAGCGTCGTTATGTGGGTGTGATGATGCTAACACTGACTCCCAGGTAGGAGGAGGATTTTACAAAGAAGGAACTGACAATTAAGATATTTACAAAGACACAATGGCCAAAGTACTTCTCCTTAACAcgcaaaataaaatgcagacagCTGCAACAGCTATGTGCAGCAATCTGAACAAcgaattgttttcttt

Function

NR:

description
PREDICTED: serine protease HTRA2, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112321 True 667 lncRNA 0.35 3 1925208 1926851

Neighbor

gene id symbol gene type direction distance location
AMCG00017401 NA coding downstream 144000 1771413 ~ 1781208 (-)
AMCG00017400 NA coding downstream 217931 1704946 ~ 1707277 (-)
AMCG00017397 NA coding downstream 324150 1600591 ~ 1601058 (-)
AMCG00017396 NA coding downstream 324918 1599588 ~ 1600290 (-)
AMCG00017395 tlx2,LOC106611621,LOC106604594 coding downstream 364022 1555528 ~ 1561186 (-)
AMCG00017409 loxl3,LOC106612874 coding upstream 10271 1937122 ~ 1946925 (-)
AMCG00017410 NA coding upstream 21309 1948160 ~ 1964564 (-)
AMCG00017407 loxl3,LOC108441751 coding upstream 58770 1985621 ~ 1993541 (-)
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding upstream 78908 2005759 ~ 2015562 (-)
AMCG00017406 NA coding upstream 96581 2023432 ~ 2032216 (-)
G90017 NA non-coding downstream 93680 1827680 ~ 1831528 (-)
G89940 NA non-coding downstream 566227 1358684 ~ 1358981 (-)
G89939 NA non-coding downstream 584119 1340872 ~ 1341089 (-)
G89912 NA non-coding downstream 885737 1039272 ~ 1039471 (-)
G89909 nanos1,nano1,LOC105894108,LOC106611616 non-coding downstream 953780 968543 ~ 971428 (-)
G90093 NA non-coding upstream 127988 2054839 ~ 2055363 (-)
G90098 NA non-coding upstream 152189 2079040 ~ 2079244 (-)
G90129 NA non-coding upstream 258534 2185385 ~ 2185739 (-)
G90139 NA non-coding upstream 358374 2285225 ~ 2285529 (-)
G90157 NA non-coding upstream 446259 2373110 ~ 2464259 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 1573422 160054 ~ 351786 (-)
G89804 NA other downstream 1819323 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 674932 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 784451 2711302 ~ 2841894 (-)
G90400 NA other upstream 2615924 4542775 ~ 4544760 (-)
G90501 NA other upstream 3231533 5158384 ~ 5221021 (-)
G90502 NA other upstream 3295622 5222473 ~ 5223047 (-)

Expression


Co-expression Network